Detailed information NTG0330625

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: D8X56_RS00295
• Genome accession: NZ_CP034314
• Coordinates: 38503..39477 (+)
• Length: 324 a.a.
• NCBI ID: WP_125301250.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain HP42K
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33503..44477

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D8X56_RS00265 (D8X56_00265)	panD	34918..35271 (+)	354	WP_000142250.1	aspartate 1-decarboxylase	-
D8X56_RS00270 (D8X56_00270)	-	35274..35576 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
D8X56_RS00275 (D8X56_00275)	-	35576..36571 (+)	996	WP_125303651.1	PDZ domain-containing protein	-
D8X56_RS00280 (D8X56_00280)	comB6	36579..37634 (+)	1056	WP_125303649.1	P-type conjugative transfer protein TrbL	Machinery gene
D8X56_RS00285 (D8X56_00285)	comB7	37650..37763 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
D8X56_RS00290 (D8X56_00290)	comB8	37760..38503 (+)	744	WP_125301248.1	virB8 family protein	Machinery gene
D8X56_RS00295 (D8X56_00295)	comB9	38503..39477 (+)	975	WP_125301250.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D8X56_RS00300 (D8X56_00300)	comB10	39470..40606 (+)	1137	WP_125301252.1	DNA type IV secretion system protein ComB10	Machinery gene
D8X56_RS00305 (D8X56_00305)	-	40677..42089 (+)	1413	WP_125301254.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D8X56_RS00310 (D8X56_00310)	gmd	42133..43278 (+)	1146	WP_125301256.1	GDP-mannose 4,6-dehydratase	-
D8X56_RS00315 (D8X56_00315)	-	43271..44203 (+)	933	WP_125301258.1	GDP-L-fucose synthase	-
D8X56_RS08160	-	44231..44449 (-)	219	Protein_40	anthranilate synthase component I	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37347.12 Da
• Isoelectric Point: 9.5535

>NTDB_id=330625 D8X56_RS00295 WP_125301250.1 38503..39477(+) (comB9) [Helicobacter pylori strain HP42K]
MRKVLYALMGFLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENALENAPTNNKPLKEEPLKEETKEKEEEIITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICS
KKSKPSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSTKWTLRLGKDYLCIRFIKK
AKDE

Nucleotide

• Length: 975 bp

>NTDB_id=330625 D8X56_RS00295 WP_125301250.1 38503..39477(+) (comB9) [Helicobacter pylori strain HP42K]
ATGCGTAAGGTTTTATATGCCCTCATGGGTTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAATCTTAGAAAG
TAACGATCGTATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAGGATAAAAAC
TATTATTCTAACGCTTTTATGAAGCCGCAAAATAAAGAAAATGCCCTTGAAAATGCCCCCACAAACAACAAGCCCTTAAA
AGAAGAACCCTTAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGATTATAACTATTGGCGATAACACCAATGCGATGAAAA
TCGTTAAAAAAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCT
AAAAAATCCAAACCCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATT
AGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATT
ACATTATCGCTGAAGACGTTTCTACTAAATGGACTTTAAGGCTAGGCAAGGACTATTTGTGTATCCGTTTTATCAAAAAG
GCTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.817	100	0.96