Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | D8X56_RS00280 | Genome accession | NZ_CP034314 |
| Coordinates | 36579..37634 (+) | Length | 351 a.a. |
| NCBI ID | WP_125303649.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain HP42K | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 31579..42634
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8X56_RS00250 (D8X56_00250) | - | 32000..32413 (+) | 414 | WP_001023008.1 | universal stress protein | - |
| D8X56_RS00255 (D8X56_00255) | - | 32428..32703 (+) | 276 | WP_121045921.1 | ATP-dependent Clp protease adaptor ClpS | - |
| D8X56_RS00260 (D8X56_00260) | - | 32703..34928 (+) | 2226 | WP_125301246.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| D8X56_RS00265 (D8X56_00265) | panD | 34918..35271 (+) | 354 | WP_000142250.1 | aspartate 1-decarboxylase | - |
| D8X56_RS00270 (D8X56_00270) | - | 35274..35576 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| D8X56_RS00275 (D8X56_00275) | - | 35576..36571 (+) | 996 | WP_125303651.1 | PDZ domain-containing protein | - |
| D8X56_RS00280 (D8X56_00280) | comB6 | 36579..37634 (+) | 1056 | WP_125303649.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| D8X56_RS00285 (D8X56_00285) | comB7 | 37650..37763 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| D8X56_RS00290 (D8X56_00290) | comB8 | 37760..38503 (+) | 744 | WP_125301248.1 | virB8 family protein | Machinery gene |
| D8X56_RS00295 (D8X56_00295) | comB9 | 38503..39477 (+) | 975 | WP_125301250.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| D8X56_RS00300 (D8X56_00300) | comB10 | 39470..40606 (+) | 1137 | WP_125301252.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| D8X56_RS00305 (D8X56_00305) | - | 40677..42089 (+) | 1413 | WP_125301254.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39791.72 Da Isoelectric Point: 8.5786
>NTDB_id=330622 D8X56_RS00280 WP_125303649.1 36579..37634(+) (comB6) [Helicobacter pylori strain HP42K]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNGVVALAFMLFAYRSLKEQNFFSASTLTEALLFVGFFALFNY
ALKNPLHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALNFISDLSHNEMSVWLFLSVLQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFVIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSSSMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNGVVALAFMLFAYRSLKEQNFFSASTLTEALLFVGFFALFNY
ALKNPLHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALNFISDLSHNEMSVWLFLSVLQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFVIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSSSMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=330622 D8X56_RS00280 WP_125303649.1 36579..37634(+) (comB6) [Helicobacter pylori strain HP42K]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATGGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGTGCTAGCACGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAATTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCACTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAATT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCGTTTTGCAAGCCCTTTTTTTGAGCGTGCTG
TTTGCAATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTAG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGATTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTGTCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAGGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTTCTTCTATGAGTGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATGGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGTGCTAGCACGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAATTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCACTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAATT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCGTTTTGCAAGCCCTTTTTTTGAGCGTGCTG
TTTGCAATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTAG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGATTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTGTCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAGGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTTCTTCTATGAGTGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
97.151 |
100 |
0.972 |