Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | EHC68_RS01840 | Genome accession | NZ_CP034305 |
| Coordinates | 355876..356469 (+) | Length | 197 a.a. |
| NCBI ID | WP_005480482.1 | Uniprot ID | Q87L64 |
| Organism | Vibrio parahaemolyticus strain 20151116002-3 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 350876..361469
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHC68_RS01825 (EHC68_01850) | - | 351592..354162 (-) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
| EHC68_RS01830 (EHC68_01855) | pilM | 354305..355321 (+) | 1017 | WP_031855783.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| EHC68_RS01835 (EHC68_01860) | pilN | 355305..355883 (+) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| EHC68_RS01840 (EHC68_01865) | pilO | 355876..356469 (+) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| EHC68_RS01845 (EHC68_01870) | pilP | 356459..356974 (+) | 516 | WP_015297395.1 | pilus assembly protein PilP | Machinery gene |
| EHC68_RS01850 (EHC68_01875) | pilQ | 357006..358754 (+) | 1749 | WP_031855784.1 | type IV pilus secretin PilQ | Machinery gene |
| EHC68_RS01855 (EHC68_01880) | aroK | 358943..359461 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| EHC68_RS01860 (EHC68_01885) | aroB | 359493..360593 (+) | 1101 | WP_025794806.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23091.63 Da Isoelectric Point: 4.8225
>NTDB_id=330569 EHC68_RS01840 WP_005480482.1 355876..356469(+) (pilO) [Vibrio parahaemolyticus strain 20151116002-3]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=330569 EHC68_RS01840 WP_005480482.1 355876..356469(+) (pilO) [Vibrio parahaemolyticus strain 20151116002-3]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAGTTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAGTTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
94.211 |
96.447 |
0.909 |
| pilO | Vibrio cholerae strain A1552 |
72.589 |
100 |
0.726 |