Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EH204_RS20315 Genome accession   NZ_CP034237
Coordinates   4550241..4551767 (+) Length   508 a.a.
NCBI ID   WP_039508690.1    Uniprot ID   A0AAI9L216
Organism   Pectobacterium carotovorum subsp. carotovorum strain JR1.1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4545241..4556767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EH204_RS20295 (EH204_20545) - 4546657..4547583 (-) 927 WP_010294671.1 branched-chain amino acid transaminase -
  EH204_RS20300 (EH204_20550) ilvM 4547609..4547869 (-) 261 WP_005969103.1 acetolactate synthase 2 small subunit -
  EH204_RS20305 (EH204_20555) ilvG 4547949..4549595 (-) 1647 WP_161509937.1 acetolactate synthase 2 catalytic subunit -
  EH204_RS20310 (EH204_20560) ilvL 4549735..4549833 (-) 99 WP_071531109.1 ilv operon leader peptide -
  EH204_RS20315 (EH204_20565) comM 4550241..4551767 (+) 1527 WP_039508690.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EH204_RS20320 (EH204_20570) - 4551824..4552162 (-) 339 WP_010283921.1 DUF413 domain-containing protein -
  EH204_RS20325 (EH204_20575) hdfR 4552283..4553110 (+) 828 WP_010294681.1 HTH-type transcriptional regulator HdfR -
  EH204_RS20330 (EH204_20580) yjfF 4553132..4554094 (-) 963 WP_010294682.1 galactofuranose ABC transporter, permease protein YjfF -
  EH204_RS20335 (EH204_20585) ytfT 4554094..4555104 (-) 1011 WP_161509938.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  EH204_RS20340 (EH204_20590) ytfR 4555091..4556611 (-) 1521 WP_039542256.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55503.15 Da        Isoelectric Point: 6.5676

>NTDB_id=330043 EH204_RS20315 WP_039508690.1 4550241..4551767(+) (comM) [Pectobacterium carotovorum subsp. carotovorum strain JR1.1]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKAGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPPIEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPSLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGDRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=330043 EH204_RS20315 WP_039508690.1 4550241..4551767(+) (comM) [Pectobacterium carotovorum subsp. carotovorum strain JR1.1]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCACATCAGCAG
CGGGCTGCCGGCCCTAACGCTGGTGGGCTTACCTGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCAAAGCGCATCACGGTCAATCTCGCTCCCGCAGACTTGCCAAAAGAAGGGGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGTCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCCGCATTAGAAGCCATAAAAGCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCACAGGGTGAAGCGCTAATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGTGGGGAAGAGGAATTGCTCAGTTGCTCCGACATGACGCCCGTTCCACCGATCGAGGA
AGATACCCTCGATCTGAAGGATATCATCGGTCAGGAGCAGGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGCCATA
ACTTGCTCTTACTGGGGCCACCGGGAACCGGGAAAACCATGCTGGCAAGCCGATTAGGCAATCTGATGCCGTCATTAAGC
GATGAAGAAGCACTAGAAAGCGCCGCTATCAACAGTCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGGCC
ATTCAGAGCACCTCACCATAGTTCCTCCATGGCTGCGCTCGTGGGCGGAGGGTCGCTGCCCAAACCCGGAGAGATCTCGC
TCGCCCACAACGGCGTGCTATTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTTTTAGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCTAAAGTGTGCTACCCAGCACGGGTGCAGCTCGTCGCCGCAATGAA
CCCCAGCCCTTCAGGCCACTATCAGGGCGTTCATAACCGATTGCCAGCACAACAAATACTGCGCTACCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTGCTGCCTCCGGGGGTGTTATCTCAGCAGCATTAT
CAAGGCGAAAGCAGCGCGACGATTCGCGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCACTACTCACTTCACGTGAAATAGAAAAACATTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTAATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATATTGAAAGTCGCGCGCACGATAGCTGACCTCGGCGATCGGGAC
AACATAGAGAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGATTGCTCATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.834

99.606

0.636
  comM Vibrio cholerae strain A1552

64.016

99.016

0.634
  comM Glaesserella parasuis strain SC1401

63.261

100

0.634
  comM Vibrio campbellii strain DS40M4

62.648

99.606

0.624
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.019

100

0.467

Multiple sequence alignment