Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EH197_RS08215 Genome accession   NZ_CP034169
Coordinates   1562751..1564595 (+) Length   614 a.a.
NCBI ID   WP_016179536.1    Uniprot ID   A0AAV3J5K5
Organism   Enterococcus avium strain 352     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1557751..1569595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EH197_RS08200 (EH197_08200) - 1557879..1559702 (+) 1824 WP_016179533.1 APC family permease -
  EH197_RS08205 (EH197_08205) - 1559908..1560354 (+) 447 WP_016179534.1 MarR family transcriptional regulator -
  EH197_RS08210 (EH197_08210) - 1560354..1562735 (+) 2382 WP_016179535.1 ABC transporter ATP-binding protein -
  EH197_RS08215 (EH197_08215) rcrQ 1562751..1564595 (+) 1845 WP_016179536.1 ABC transporter ATP-binding protein Regulator
  EH197_RS08220 (EH197_08220) - 1564657..1565235 (-) 579 WP_049220539.1 hypothetical protein -
  EH197_RS08225 (EH197_08225) - 1565225..1566244 (-) 1020 WP_137439364.1 DUF4947 domain-containing protein -
  EH197_RS08230 (EH197_08230) - 1566524..1567162 (+) 639 WP_205224346.1 L-fuculose-phosphate aldolase -
  EH197_RS08235 (EH197_08235) - 1567189..1568229 (+) 1041 WP_137439368.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68111.74 Da        Isoelectric Point: 6.2100

>NTDB_id=329519 EH197_RS08215 WP_016179536.1 1562751..1564595(+) (rcrQ) [Enterococcus avium strain 352]
MAEQKQNRPRGGGPGRGMSAPVEKAKDFKGTIKKLVSYLGAYKIAVFFVMIFAAASTIFNIWGPKILSKAITELFNGLIK
KYQGTGDINFDKIGGILLFMLGLYVVASLFGIIQGWIMSTISQKITYRMRKEISEKINRMPMNYFESRTTGEVLSRITND
VDTLGQSLNQSLTQLITSTFTIIGVIVMMLSISVKMTGIAILIVPISLLLIMVVVKNSQKYFKTQQEYLGVINGKVEETI
GGYTIVRLFNEEENSLKEFKEQNDILFKSAWKSQFLSGLMQPIMNFVGNLGYVGVAIAGGVMAYNGTITVGDIQAFIQYV
RNLTQPIAQLAQVSNMLQSMAAAAERVFEFLAEDEEEQMAENPVQIDKAKGMVDFDHVQFGYTSDKIVIQDFTSHVDPGQ
TVAIVGPTGAGKTTMVKLLMRFYDVNSGAIKIDGHNIKDFNRADLRKNIGMVLQDTWLFKGTIMDNLRYGRLDATDEEVY
AAAKAAHVDHFIKTLPGGYDMELNEESSNISQGQKQLLTIARAILADKPILILDEATSSVDTRTEGLIQEAMNNLMKGRT
SFVIAHRLSTIKDADKILYMQGGDIKEQGSHEELLAQNGLYAALYNSQFEELSE

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=329519 EH197_RS08215 WP_016179536.1 1562751..1564595(+) (rcrQ) [Enterococcus avium strain 352]
ATGGCAGAACAAAAACAAAATCGCCCTCGTGGTGGCGGACCTGGTCGAGGGATGAGTGCGCCAGTTGAAAAAGCGAAAGA
TTTCAAAGGTACGATCAAAAAATTGGTTTCGTATCTTGGTGCTTATAAAATCGCCGTTTTCTTTGTAATGATCTTTGCAG
CAGCTTCAACGATCTTCAATATTTGGGGACCAAAGATCCTGTCAAAGGCGATCACAGAATTATTTAACGGTCTGATCAAG
AAATATCAGGGAACTGGCGATATCAACTTTGATAAAATCGGTGGTATCCTGCTCTTCATGTTAGGTCTTTATGTAGTTGC
TTCCTTATTTGGGATCATCCAAGGCTGGATCATGTCGACGATTTCGCAAAAGATTACTTATCGGATGCGGAAAGAGATTT
CTGAAAAAATCAACCGCATGCCAATGAATTATTTTGAAAGCCGCACGACTGGTGAGGTTTTATCACGAATCACTAATGAC
GTGGATACTTTAGGACAATCATTGAACCAAAGTTTGACTCAATTAATTACTTCGACATTTACCATAATCGGAGTTATCGT
GATGATGCTTTCAATCTCAGTGAAGATGACCGGTATCGCGATCTTGATCGTGCCGATCTCACTTCTATTGATCATGGTTG
TCGTGAAGAATTCGCAAAAGTATTTCAAAACGCAACAAGAATATCTTGGTGTGATCAATGGTAAAGTTGAAGAAACAATC
GGTGGATACACCATCGTACGCTTATTCAACGAGGAAGAAAACTCATTGAAAGAATTCAAAGAACAAAATGATATTCTCTT
CAAATCAGCATGGAAATCTCAATTTCTTTCTGGTTTGATGCAGCCGATCATGAATTTTGTCGGTAACTTAGGATATGTAG
GTGTGGCGATTGCCGGTGGTGTGATGGCTTATAACGGTACGATCACTGTTGGGGATATTCAAGCGTTTATTCAATATGTA
CGTAATCTGACACAGCCGATCGCACAACTAGCTCAAGTATCAAACATGCTGCAATCAATGGCAGCAGCGGCAGAACGGGT
CTTTGAGTTCTTAGCAGAAGATGAAGAAGAACAAATGGCTGAAAATCCTGTTCAAATTGATAAGGCAAAAGGAATGGTCG
ATTTCGATCATGTTCAATTTGGCTATACATCTGATAAAATCGTTATCCAAGATTTTACTTCGCATGTTGATCCTGGTCAG
ACAGTTGCGATTGTTGGTCCAACTGGTGCAGGTAAAACCACGATGGTTAAATTGCTGATGCGGTTTTACGATGTCAACTC
TGGTGCGATTAAGATTGATGGTCATAATATCAAAGATTTCAATCGTGCTGATTTGCGTAAGAACATTGGGATGGTCTTGC
AGGATACGTGGTTGTTCAAAGGGACGATCATGGACAACTTGCGGTACGGTCGTTTAGATGCGACCGACGAAGAAGTTTAC
GCAGCAGCTAAAGCCGCTCACGTGGATCACTTCATCAAGACATTGCCTGGTGGCTATGACATGGAATTGAACGAAGAATC
TTCCAATATCTCTCAAGGGCAAAAGCAATTGCTGACGATTGCGCGTGCAATCTTAGCTGATAAGCCAATTTTGATCTTGG
ATGAGGCAACATCATCTGTTGATACACGGACAGAAGGATTGATTCAAGAAGCGATGAACAATCTGATGAAGGGGCGGACG
TCATTTGTTATCGCTCACCGTCTATCAACGATCAAGGATGCCGATAAGATTCTTTATATGCAAGGCGGAGATATCAAAGA
ACAAGGAAGCCACGAAGAACTATTGGCTCAAAACGGACTTTATGCCGCGTTGTACAACTCGCAATTTGAAGAATTATCAG
AATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(46-326)

ABC transporter (ABC_tran)

(391-538)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.458

94.951

0.489

Multiple sequence alignment