Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SUB_RS07785 | Genome accession | NC_012004 |
| Coordinates | 1547625..1548116 (-) | Length | 163 a.a. |
| NCBI ID | WP_015911862.1 | Uniprot ID | B9DVK3 |
| Organism | Streptococcus uberis 0140J | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1542625..1553116
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SUB_RS07770 (SUB1552) | - | 1545103..1546047 (+) | 945 | WP_015911860.1 | magnesium transporter CorA family protein | - |
| SUB_RS07775 (SUB1553) | - | 1546332..1546997 (+) | 666 | WP_015911861.1 | DUF1129 domain-containing protein | - |
| SUB_RS07780 (SUB1555) | rpsR | 1547332..1547571 (-) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| SUB_RS07785 (SUB1556) | ssb | 1547625..1548116 (-) | 492 | WP_015911862.1 | single-stranded DNA-binding protein | Machinery gene |
| SUB_RS07790 (SUB1557) | rpsF | 1548137..1548427 (-) | 291 | WP_015911863.1 | 30S ribosomal protein S6 | - |
| SUB_RS07795 (SUB1558) | mutY | 1548650..1549807 (+) | 1158 | WP_041817674.1 | A/G-specific adenine glycosylase | - |
| SUB_RS07800 (SUB1559) | trxA | 1549819..1550133 (-) | 315 | WP_015911865.1 | thioredoxin | - |
| SUB_RS07805 (SUB1560) | - | 1550245..1552578 (-) | 2334 | WP_015911866.1 | endonuclease MutS2 | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18047.86 Da Isoelectric Point: 4.9371
>NTDB_id=32942 SUB_RS07785 WP_015911862.1 1547625..1548116(-) (ssb) [Streptococcus uberis 0140J]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVAENFQMLESRATREGGSSNSYGNTGFGNDASSNSYSAPSQQTPHFGREESPFGNANPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVAENFQMLESRATREGGSSNSYGNTGFGNDASSNSYSAPSQQTPHFGREESPFGNANPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=32942 SUB_RS07785 WP_015911862.1 1547625..1548116(-) (ssb) [Streptococcus uberis 0140J]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAAGATGCAGAACTTCGTTACACACCAAGTCAAGTGGCTGTTGC
TACTTTTACACTTGCTGTTAATCGCACTTTTAAAAGCCAAAATGGTGAGCGTGAAGCAGATTTTATTAACTGTGTTATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCGAAAAAAGGTGCTTTAATCGGTATTACAGGTCGCATTCAGACTCGT
AATTACGAAAATCAGCAAGGTCAACGGGTTTATGTAACTGAAGTGGTTGCGGAAAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGTTCTTCGAACTCTTATGGTAATACTGGCTTTGGCAATGACGCTTCAAGCAATAGTTATTCTGCAC
CTTCTCAACAAACACCTCATTTTGGTCGTGAAGAAAGTCCATTTGGCAATGCCAATCCTATGGATATTTCAGATGACGAT
TTACCTTTCTAA
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAAGATGCAGAACTTCGTTACACACCAAGTCAAGTGGCTGTTGC
TACTTTTACACTTGCTGTTAATCGCACTTTTAAAAGCCAAAATGGTGAGCGTGAAGCAGATTTTATTAACTGTGTTATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCGAAAAAAGGTGCTTTAATCGGTATTACAGGTCGCATTCAGACTCGT
AATTACGAAAATCAGCAAGGTCAACGGGTTTATGTAACTGAAGTGGTTGCGGAAAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGTTCTTCGAACTCTTATGGTAATACTGGCTTTGGCAATGACGCTTCAAGCAATAGTTATTCTGCAC
CTTCTCAACAAACACCTCATTTTGGTCGTGAAGAAAGTCCATTTGGCAATGCCAATCCTATGGATATTTCAGATGACGAT
TTACCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.725 |
100 |
0.595 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.595 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
50.862 |
71.166 |
0.362 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.66 |
65.031 |
0.362 |
| ssb | Vibrio cholerae strain A1552 |
33.714 |
100 |
0.362 |