Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EH163_RS00135 Genome accession   NZ_CP034115
Coordinates   19659..20132 (-) Length   157 a.a.
NCBI ID   WP_124726168.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CDC121     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 14659..25132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EH163_RS00085 - 14907..15257 (-) 351 WP_124726230.1 HNH endonuclease -
  EH163_RS00090 - 15734..16180 (-) 447 WP_002484732.1 transcriptional regulator -
  EH163_RS00095 - 16197..16346 (-) 150 WP_002484731.1 DUF1514 family protein -
  EH163_RS00100 - 16346..16513 (-) 168 WP_124726164.1 regulator -
  EH163_RS00105 - 16618..16920 (+) 303 WP_124726165.1 DUF4870 domain-containing protein -
  EH163_RS00110 dut 17011..17433 (-) 423 WP_049367129.1 dUTP diphosphatase -
  EH163_RS00115 - 17490..17807 (+) 318 WP_237624469.1 hypothetical protein -
  EH163_RS13205 - 17947..18294 (-) 348 WP_267953678.1 hypothetical protein -
  EH163_RS00125 - 18295..18702 (-) 408 WP_124726166.1 RusA family crossover junction endodeoxyribonuclease -
  EH163_RS00130 - 18742..19629 (-) 888 WP_124726167.1 DnaD domain protein -
  EH163_RS00135 ssbA 19659..20132 (-) 474 WP_124726168.1 single-stranded DNA-binding protein Machinery gene
  EH163_RS00140 - 20133..20750 (-) 618 WP_237624473.1 MBL fold metallo-hydrolase -
  EH163_RS00145 - 20831..21751 (-) 921 WP_124726170.1 recombinase RecT -
  EH163_RS00150 - 21753..23705 (-) 1953 WP_124726171.1 ATPase -
  EH163_RS12820 - 23767..23943 (-) 177 WP_164493039.1 hypothetical protein -
  EH163_RS00155 - 24031..24312 (+) 282 WP_124726172.1 hypothetical protein -
  EH163_RS12825 - 24309..24455 (-) 147 WP_001830230.1 hypothetical protein -
  EH163_RS00160 - 24469..24678 (-) 210 WP_001830281.1 hypothetical protein -
  EH163_RS12830 - 24733..24909 (+) 177 WP_164493040.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17693.43 Da        Isoelectric Point: 4.7719

>NTDB_id=329136 EH163_RS00135 WP_124726168.1 19659..20132(-) (ssbA) [Staphylococcus epidermidis strain CDC121]
MINRVVLVGRLTKDPEFRTTPNGVEVTNFILAINRNFTNANGEREADFINVITFRKQAVNVNEYLSKGKLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNANGSQQNDYYQQQSRAQQGQNRQQSNEPVGDNPFANANGPIDINDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=329136 EH163_RS00135 WP_124726168.1 19659..20132(-) (ssbA) [Staphylococcus epidermidis strain CDC121]
ATGATTAACAGAGTCGTATTAGTAGGTCGTTTAACTAAAGATCCAGAGTTTAGAACAACGCCTAACGGTGTTGAAGTAAC
AAACTTCATACTAGCGATTAACCGTAATTTTACGAACGCTAATGGAGAACGAGAAGCAGATTTTATAAACGTTATAACTT
TCAGAAAGCAAGCTGTAAACGTAAACGAGTATTTATCTAAAGGAAAACTAGCAGGCGTTGATGGACGAATTCAATCACGC
AGCTATGAAAATCAAGAAGGTCGTCGGATTTTTGTCACTGAAGTTGTCGCAGATAGTGTTCAATTTCTCGAACCTAAAAA
TGCAAATGGTAGTCAACAAAATGATTACTACCAACAACAATCAAGAGCTCAGCAAGGACAAAACAGACAACAAAGCAATG
AACCGGTTGGAGATAACCCGTTTGCAAACGCTAATGGTCCAATTGATATTAATGATGATGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.637
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

67.516

0.382
  ssb Neisseria meningitidis MC58

34.682

100

0.382
  ssb Neisseria gonorrhoeae MS11

34.682

100

0.382

Multiple sequence alignment