Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   FOZ66_RS12800 Genome accession   NZ_CP041945
Coordinates   2680391..2681062 (+) Length   223 a.a.
NCBI ID   WP_003090494.1    Uniprot ID   A0A0H2ZC88
Organism   Pseudomonas aeruginosa strain ST773     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2675391..2686062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOZ66_RS12765 (FOZ66_13140) ppyR 2675864..2676121 (+) 258 WP_003090502.1 psl/pyoverdine operon transcriptional regulator PpyR -
  FOZ66_RS12770 (FOZ66_13145) - 2676108..2677301 (+) 1194 WP_003131074.1 NnrS family protein -
  FOZ66_RS12775 (FOZ66_13150) - 2677302..2677568 (-) 267 WP_003090500.1 DUF5329 domain-containing protein -
  FOZ66_RS12780 (FOZ66_13155) - 2677552..2678445 (-) 894 WP_033939019.1 hypothetical protein -
  FOZ66_RS12785 (FOZ66_13160) - 2678472..2679554 (-) 1083 WP_003113385.1 hypothetical protein -
  FOZ66_RS12790 (FOZ66_13165) - 2679769..2680077 (+) 309 WP_003090497.1 PepSY domain-containing protein -
  FOZ66_RS12795 (FOZ66_13170) - 2680077..2680391 (+) 315 WP_003131079.1 PepSY domain-containing protein -
  FOZ66_RS12800 (FOZ66_13175) ciaR 2680391..2681062 (+) 672 WP_003090494.1 two-component system response regulator CarR Regulator
  FOZ66_RS12805 (FOZ66_13180) carS 2681059..2682396 (+) 1338 WP_033939020.1 two-component system sensor histidine kinase CarS -
  FOZ66_RS32620 - 2682790..2683326 (-) 537 Protein_2535 methyl-accepting chemotaxis protein -
  FOZ66_RS32625 - 2683696..2684934 (-) 1239 Protein_2536 chemotaxis protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24729.20 Da        Isoelectric Point: 5.8445

>NTDB_id=329028 FOZ66_RS12800 WP_003090494.1 2680391..2681062(+) (ciaR) [Pseudomonas aeruginosa strain ST773]
MRLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLPGRPGLEILQEWRGLGLATPVLILTA
RGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAHGLANQSQLEAAGLRLDEQRQCVCLNGADVDLTAAEFRLLR
YFMLHPGQVLSKGHLAEHLYDGETERDSNVIEVHVNHLRRKLGREVIETRRGQGYRYAGVAAG

Nucleotide


Download         Length: 672 bp        

>NTDB_id=329028 FOZ66_RS12800 WP_003090494.1 2680391..2681062(+) (ciaR) [Pseudomonas aeruginosa strain ST773]
ATGCGGTTGCTGCTGGTTGAGGATCACGTTCCCCTGGCCGACGAACTGATGGCCAGCCTGACCCGCCAGGGCTACGCGGT
GGACTGGCTGGCCGACGGCCGCGACGCGGCGGTGCAGGGCGCCAGCGAGCCCTACGACCTGATCATCCTCGACCTCGGCC
TGCCCGGGCGCCCCGGCCTGGAGATACTCCAGGAGTGGCGTGGGCTGGGACTCGCGACTCCGGTGCTGATCCTCACCGCG
CGCGGTTCCTGGGCCGAACGCATCGATGGCCTCAAGGCCGGTGCCGACGACTACCTGACCAAGCCGTTCCATCCGGAAGA
GTTGGCCTTGCGCATCCAGGCCCTGTTGCGCCGCGCCCATGGGCTGGCCAACCAGAGCCAGCTGGAGGCCGCTGGGCTGC
GCCTGGACGAGCAGCGCCAGTGCGTGTGCCTGAACGGCGCCGACGTCGACCTGACCGCCGCCGAATTCCGCCTGCTGCGC
TATTTCATGCTGCACCCCGGCCAGGTCCTGTCCAAGGGGCACCTGGCCGAGCATCTGTACGACGGCGAGACCGAACGCGA
TTCCAACGTCATCGAGGTCCACGTCAACCACCTGCGGCGCAAGCTCGGCCGCGAGGTGATCGAGACCCGCCGTGGCCAGG
GTTACCGCTACGCCGGGGTGGCCGCCGGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

37.727

98.655

0.372
  ciaR Streptococcus pneumoniae Rx1

37.273

98.655

0.368
  ciaR Streptococcus pneumoniae D39

37.273

98.655

0.368
  ciaR Streptococcus pneumoniae R6

37.273

98.655

0.368
  ciaR Streptococcus pneumoniae TIGR4

37.273

98.655

0.368
  micA Streptococcus pneumoniae Cp1015

35.683

100

0.363
  vicR Streptococcus mutans UA159

35.526

100

0.363

Multiple sequence alignment