Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EGH20_RS09135 Genome accession   NZ_CP034026
Coordinates   1576155..1577651 (-) Length   498 a.a.
NCBI ID   WP_047917830.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1571155..1582651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH20_RS09100 (EGH20_09100) mraZ 1571263..1571718 (-) 456 WP_003689463.1 division/cell wall cluster transcriptional repressor MraZ -
  EGH20_RS09105 (EGH20_09105) - 1571997..1573244 (+) 1248 WP_010951292.1 class I SAM-dependent methyltransferase -
  EGH20_RS09120 (EGH20_09120) - 1573685..1574506 (-) 822 WP_003689465.1 undecaprenyl-diphosphate phosphatase -
  EGH20_RS09125 (EGH20_09125) dsbA1 1574539..1575183 (-) 645 WP_003698856.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  EGH20_RS09130 (EGH20_09130) ftsN 1575186..1576049 (-) 864 WP_010360712.1 cell division protein FtsN -
  EGH20_RS09135 (EGH20_09135) comM 1576155..1577651 (-) 1497 WP_047917830.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EGH20_RS09140 (EGH20_09140) - 1577665..1577985 (-) 321 WP_002216505.1 accessory factor UbiK family protein -
  EGH20_RS09150 (EGH20_09150) putP 1578473..1579999 (+) 1527 WP_003698857.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53382.37 Da        Isoelectric Point: 7.0324

>NTDB_id=328298 EGH20_RS09135 WP_047917830.1 1576155..1577651(-) (comM) [Neisseria gonorrhoeae strain FQ20]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTECSVPQMPSEHGGQPDLCDVKGQHSARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
AEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSASVLERVIAARGKQYARQGKVNAALSVSELDSQARIQKEAQEALGSLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=328298 EGH20_RS09135 WP_047917830.1 1576155..1577651(-) (comM) [Neisseria gonorrhoeae strain FQ20]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCCTGCCGCATTTCAACATCGTCGGACTGCCCGATACGGAAGTAAAGGAAAGCCGCGACCGCGTCCGTGCCGCCATTA
TTCAAAGCGGTTTTGAATTCCCCGCCAAAAAAATCACCGTCAACCTCGCCCCTGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATCGGCATCCTTGCCGCATCGGGGCAGGTTGCACCCGAAAAGCTGGCGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGTTGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAACGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCTCATTTGAACGGTATCGAACCTTTGGCGCAAACCGAATGTTCCGTACCGCAAATGCCGTCTGAACA
TGGCGGACAACCTGATTTGTGTGATGTGAAAGGTCAGCACTCTGCCCGCCTTGCTTTGGAAATCGCCGCCGCAGGCGGAC
ACAGCCTCTTGATGATGGGCCCGCCGGGAACAGGCAAGTCTATGCTCTCCCAACGGCTGCCCGGCATCCTGCCGCCGCTG
GCCGAAGACGAATTGGTAGAAGTTTGGGCATTGCGTTCGCTCCTGCCCAACCACCAACAACAACTCGACAGCAACCGTCC
TTTCCGCAGTCCGCATCACAGCGCCAGCGCGGCGGCTATGGTCGGCGGCGGTTCGGATCCGCGTCCGGGCGAGATTTCAT
TGGCGCATCACGGCGTTTTATTTTTGGACGAATTGCCCGAGTTCGACCGCAAAGTTTTGGAGGTTTTGCGCGAACCGTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCCGCCAAATTCCAGCTTGTCGCTGCCATGAA
CCCGTGTCCGTGCGGTTATCTCGGGCATCCCGTCAAACCCTGCCGCTGCACGCCCGAAAGTGTCGCGCGTTACCGAAGCA
AAATTTCCGGTCCGCTGCTCGACCGCATCGATTTGACCATCGAAGTCCCCAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCGGGCGAAAGCAGTGCGTCCGTTTTGGAACGCGTCATCGCCGCCCGCGGCAAACAATACGCACGGCAGGGCAAAGT
CAACGCCGCTTTGAGCGTCAGCGAACTCGATTCCCAAGCCCGCATCCAAAAAGAAGCGCAGGAAGCCTTGGGTAGCCTGC
TGGAAAAATTGTCTCTTTCCGCCCGCAGCTTCCACCGCATTATGCGCGTGGCGCGTACATTGGCGGATTTGGCGGGCGAT
GAAGAAGTCGGCAGAAGCCACGTCATGAAAGCCATAGGCTTCCGTCGTGCTTTATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.386

100

0.538
  comM Vibrio campbellii strain DS40M4

52.113

99.799

0.52
  comM Haemophilus influenzae Rd KW20

49.499

100

0.496
  comM Glaesserella parasuis strain SC1401

48.81

100

0.494
  comM Legionella pneumophila str. Paris

46.733

100

0.474
  comM Legionella pneumophila strain ERS1305867

46.733

100

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.545

100

0.43

Multiple sequence alignment