Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilI   Type   Machinery gene
Locus tag   EGH20_RS02750 Genome accession   NZ_CP034026
Coordinates   451123..451731 (+) Length   202 a.a.
NCBI ID   WP_047920984.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ20     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446123..456731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH20_RS02710 (EGH20_02710) - 446570..446902 (+) 333 WP_003687908.1 hypothetical protein -
  EGH20_RS02715 (EGH20_02715) - 447229..447738 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  EGH20_RS02725 (EGH20_02725) - 447968..448549 (-) 582 WP_033910016.1 superoxide dismutase -
  EGH20_RS02735 (EGH20_02735) dnaB 448712..450118 (+) 1407 WP_047920786.1 replicative DNA helicase -
  EGH20_RS02745 (EGH20_02745) pilH 450426..451091 (+) 666 WP_047920982.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EGH20_RS02750 (EGH20_02750) pilI 451123..451731 (+) 609 WP_047920984.1 type IV pilus modification protein PilV Machinery gene
  EGH20_RS02755 (EGH20_02755) pilJ 451728..452696 (+) 969 WP_047920986.1 PilW family protein Machinery gene
  EGH20_RS02760 (EGH20_02760) pilK 452675..453283 (+) 609 WP_047920987.1 pilus assembly protein Machinery gene
  EGH20_RS02765 (EGH20_02765) pilL 453285..453758 (+) 474 WP_170959666.1 PilX family type IV pilin Machinery gene
  EGH20_RS02770 (EGH20_02770) - 453828..454136 (-) 309 WP_047920338.1 AzlD family protein -
  EGH20_RS13380 - 454133..454843 (-) 711 Protein_457 AzlC family ABC transporter permease -
  EGH20_RS02780 (EGH20_02780) dut 455009..455461 (+) 453 WP_010359930.1 dUTP diphosphatase -
  EGH20_RS02785 (EGH20_02785) dapC 455539..456726 (+) 1188 WP_123776160.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22039.93 Da        Isoelectric Point: 5.2847

>NTDB_id=328279 EGH20_RS02750 WP_047920984.1 451123..451731(+) (pilI) [Neisseria gonorrhoeae strain FQ20]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYTGSYPPTSSNGDFKLNNLISKRDLAKTQLDRFGYELKNALPDAAGIHYAVCKDSSGKEPTLSGNTFSPNCDNKANG
DTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=328279 EGH20_RS02750 WP_047920984.1 451123..451731(+) (pilI) [Neisseria gonorrhoeae strain FQ20]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTTGCTATGCTGGT
TCTGACCATCGGTATTTTGGCATTGTTGTCCGTGCAGTTGCGGACGGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACACGGGGTCGTACCCCCCCACTTCCTCTAACGGCGATTTCAAGCTTAATAATTTGATAAGTAAGAGGGA
TTTGGCAAAGACCCAGTTGGACAGGTTCGGTTATGAATTGAAAAATGCCTTGCCGGATGCGGCAGGTATCCATTACGCCG
TCTGCAAGGATTCGTCGGGTAAAGAGCCGACATTGTCCGGCAATACTTTTTCTCCAAATTGCGATAATAAGGCAAACGGG
GATACTTTAATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAAGTGAGCGG
CGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilI Neisseria gonorrhoeae MS11

92.574

100

0.926
  pilV Neisseria gonorrhoeae MS11

92.574

100

0.926
  pilV Neisseria meningitidis 8013

86.408

100

0.881

Multiple sequence alignment