Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   FO444_RS00610 Genome accession   NZ_CP041759
Coordinates   109631..110890 (-) Length   419 a.a.
NCBI ID   WP_058221151.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain IMAU11823     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 104631..115890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FO444_RS00585 - 105631..105824 (+) 194 Protein_107 hypothetical protein -
  FO444_RS00590 (FO444_00615) rpmG 106244..106393 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  FO444_RS00595 (FO444_00620) rpmF 106423..106596 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  FO444_RS00600 (FO444_00625) - 106960..108741 (+) 1782 WP_240733537.1 heavy metal translocating P-type ATPase -
  FO444_RS00605 (FO444_00630) spo0J 108791..109576 (-) 786 WP_021722894.1 ParB/RepB/Spo0J family partition protein Regulator
  FO444_RS00610 (FO444_00635) rarA 109631..110890 (-) 1260 WP_058221151.1 replication-associated recombination protein A Machinery gene
  FO444_RS00615 (FO444_00640) - 110934..111422 (-) 489 WP_058213361.1 GNAT family N-acetyltransferase -
  FO444_RS00620 (FO444_00645) - 111575..112042 (+) 468 WP_010905112.1 DUF3013 family protein -
  FO444_RS00625 (FO444_00650) - 112072..113625 (+) 1554 WP_240733538.1 ABC-F family ATP-binding cassette domain-containing protein -
  FO444_RS00630 (FO444_00655) - 113756..114040 (+) 285 WP_010905114.1 hypothetical protein -
  FO444_RS00635 (FO444_00660) - 114078..114566 (+) 489 WP_010905115.1 YdeI/OmpD-associated family protein -
  FO444_RS00640 (FO444_00665) prmA 114584..115537 (+) 954 WP_058202929.1 50S ribosomal protein L11 methyltransferase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46772.04 Da        Isoelectric Point: 5.6008

>NTDB_id=328282 FO444_RS00610 WP_058221151.1 109631..110890(-) (rarA) [Lactococcus lactis subsp. lactis strain IMAU11823]
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLESEDLEFAVD
LSLQDKERGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=328282 FO444_RS00610 WP_058221151.1 109631..110890(-) (rarA) [Lactococcus lactis subsp. lactis strain IMAU11823]
ATGGCACAAAATCTTGCAAGACGAATGAGACCAAGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCAACTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCGATTGCTGGAACAATGAATGTCGCTTTTCGGACATTTAATGCAACGACAGACACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGTCAGCTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCTAA
ACAAGATTTTCTTTTACCACTTTTAGAAAATGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAATCAGAAGATTTAGAATTTGCTGTAGAC
CTAAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACCATTGACGATGATGCACTTTACTTTTTAATTCATTC
GACTAATGGGGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACATCATGTCACTTTAG
ATGATATGGAAAATTCTTTGCAAAGAAAAGCTGCAACTTTTGATAAAGATGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAACGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGTGGAGATTTGCA
GAGTCTAGCCCGGCGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
CAGCATTATCAGCAGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAATGCGGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTACC
ACCACACTTACAGGATGGCCATTACGCTGGGGCAAAGGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGATTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(247-411)

AAA C-terminal domain (AAA_assoc_2)

(173-246)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.242

100

0.597

Multiple sequence alignment