Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   EGH20_RS02755 Genome accession   NZ_CP034026
Coordinates   451728..452696 (+) Length   322 a.a.
NCBI ID   WP_047920986.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ20     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446728..457696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH20_RS02715 (EGH20_02715) - 447229..447738 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  EGH20_RS02725 (EGH20_02725) - 447968..448549 (-) 582 WP_033910016.1 superoxide dismutase -
  EGH20_RS02735 (EGH20_02735) dnaB 448712..450118 (+) 1407 WP_047920786.1 replicative DNA helicase -
  EGH20_RS02745 (EGH20_02745) pilH 450426..451091 (+) 666 WP_047920982.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EGH20_RS02750 (EGH20_02750) pilI 451123..451731 (+) 609 WP_047920984.1 type IV pilus modification protein PilV Machinery gene
  EGH20_RS02755 (EGH20_02755) pilJ 451728..452696 (+) 969 WP_047920986.1 PilW family protein Machinery gene
  EGH20_RS02760 (EGH20_02760) pilK 452675..453283 (+) 609 WP_047920987.1 pilus assembly protein Machinery gene
  EGH20_RS02765 (EGH20_02765) pilL 453285..453758 (+) 474 WP_170959666.1 PilX family type IV pilin Machinery gene
  EGH20_RS02770 (EGH20_02770) - 453828..454136 (-) 309 WP_047920338.1 AzlD family protein -
  EGH20_RS13380 - 454133..454843 (-) 711 Protein_457 AzlC family ABC transporter permease -
  EGH20_RS02780 (EGH20_02780) dut 455009..455461 (+) 453 WP_010359930.1 dUTP diphosphatase -
  EGH20_RS02785 (EGH20_02785) dapC 455539..456726 (+) 1188 WP_123776160.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35453.39 Da        Isoelectric Point: 8.9581

>NTDB_id=328280 EGH20_RS02755 WP_047920986.1 451728..452696(+) (pilJ) [Neisseria gonorrhoeae strain FQ20]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSIIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHNKDDIVDSSNQTQFNSAKPDAKQENPLFPLKRSSMDKQLIPVAESTDIKYPGFTQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGRIADEEGLFRFQLDDKGKWGNPQLLAK
KIKRMKVLYIYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNVCANR
TL

Nucleotide


Download         Length: 969 bp        

>NTDB_id=328280 EGH20_RS02755 WP_047920986.1 451728..452696(+) (pilJ) [Neisseria gonorrhoeae strain FQ20]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTATAATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATAATAAAGACGATATTGTTGATTCAAGTAATCAAACTCAATTTAACTCTGCAAAACCCGA
TGCCAAACAAGAAAATCCCCTTTTTCCCTTAAAAAGGAGCAGCATGGATAAACAACTGATTCCCGTTGCTGAATCCACAG
ATATTAAATATCCGGGTTTTACCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
GGATTGCCGATGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAA
AAGATTAAACGTATGAAAGTGCTGTATATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAGCAATT
CAAATATACGGATAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCCTTAATGCCAAGA
TTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGA
ACGCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

79.385

100

0.801

Multiple sequence alignment