Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   EGH20_RS02760 Genome accession   NZ_CP034026
Coordinates   452675..453283 (+) Length   202 a.a.
NCBI ID   WP_047920987.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ20     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447675..458283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH20_RS02725 (EGH20_02725) - 447968..448549 (-) 582 WP_033910016.1 superoxide dismutase -
  EGH20_RS02735 (EGH20_02735) dnaB 448712..450118 (+) 1407 WP_047920786.1 replicative DNA helicase -
  EGH20_RS02745 (EGH20_02745) pilH 450426..451091 (+) 666 WP_047920982.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EGH20_RS02750 (EGH20_02750) pilI 451123..451731 (+) 609 WP_047920984.1 type IV pilus modification protein PilV Machinery gene
  EGH20_RS02755 (EGH20_02755) pilJ 451728..452696 (+) 969 WP_047920986.1 PilW family protein Machinery gene
  EGH20_RS02760 (EGH20_02760) pilK 452675..453283 (+) 609 WP_047920987.1 pilus assembly protein Machinery gene
  EGH20_RS02765 (EGH20_02765) pilL 453285..453758 (+) 474 WP_170959666.1 PilX family type IV pilin Machinery gene
  EGH20_RS02770 (EGH20_02770) - 453828..454136 (-) 309 WP_047920338.1 AzlD family protein -
  EGH20_RS13380 - 454133..454843 (-) 711 Protein_457 AzlC family ABC transporter permease -
  EGH20_RS02780 (EGH20_02780) dut 455009..455461 (+) 453 WP_010359930.1 dUTP diphosphatase -
  EGH20_RS02785 (EGH20_02785) dapC 455539..456726 (+) 1188 WP_123776160.1 succinyldiaminopimelate transaminase -
  EGH20_RS02790 (EGH20_02790) yaaA 457037..457816 (+) 780 WP_124723909.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21896.78 Da        Isoelectric Point: 8.0870

>NTDB_id=328281 EGH20_RS02760 WP_047920987.1 452675..453283(+) (pilK) [Neisseria gonorrhoeae strain FQ20]
MRKQNALTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNANEESFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTASVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=328281 EGH20_RS02760 WP_047920987.1 452675..453283(+) (pilK) [Neisseria gonorrhoeae strain FQ20]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTACGGACAAATAATGCTAATGA
AGAGTCTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGCACGGCAAGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.074

100

0.955

Multiple sequence alignment