Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   FO444_RS00605 Genome accession   NZ_CP041759
Coordinates   108791..109576 (-) Length   261 a.a.
NCBI ID   WP_021722894.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain IMAU11823     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 103791..114576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FO444_RS00580 (FO444_00610) - 104629..105531 (-) 903 WP_240733536.1 LCP family protein -
  FO444_RS00585 - 105631..105824 (+) 194 Protein_107 hypothetical protein -
  FO444_RS00590 (FO444_00615) rpmG 106244..106393 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  FO444_RS00595 (FO444_00620) rpmF 106423..106596 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  FO444_RS00600 (FO444_00625) - 106960..108741 (+) 1782 WP_240733537.1 heavy metal translocating P-type ATPase -
  FO444_RS00605 (FO444_00630) spo0J 108791..109576 (-) 786 WP_021722894.1 ParB/RepB/Spo0J family partition protein Regulator
  FO444_RS00610 (FO444_00635) rarA 109631..110890 (-) 1260 WP_058221151.1 replication-associated recombination protein A Machinery gene
  FO444_RS00615 (FO444_00640) - 110934..111422 (-) 489 WP_058213361.1 GNAT family N-acetyltransferase -
  FO444_RS00620 (FO444_00645) - 111575..112042 (+) 468 WP_010905112.1 DUF3013 family protein -
  FO444_RS00625 (FO444_00650) - 112072..113625 (+) 1554 WP_240733538.1 ABC-F family ATP-binding cassette domain-containing protein -
  FO444_RS00630 (FO444_00655) - 113756..114040 (+) 285 WP_010905114.1 hypothetical protein -
  FO444_RS00635 (FO444_00660) - 114078..114566 (+) 489 WP_010905115.1 YdeI/OmpD-associated family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29755.63 Da        Isoelectric Point: 9.5731

>NTDB_id=328281 FO444_RS00605 WP_021722894.1 108791..109576(-) (spo0J) [Lactococcus lactis subsp. lactis strain IMAU11823]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTILKHVENREISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKVTDKSVSKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFDNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=328281 FO444_RS00605 WP_021722894.1 108791..109576(-) (spo0J) [Lactococcus lactis subsp. lactis strain IMAU11823]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATTAGA
AGCTATTCTGATGAAGAAATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAATCCACTAGAAGAGTC
CAAAAGCTTGGCACAACTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAATTTTGAAGCATGTTGAAAATCGAGAGATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAAGTTACTGACAAATCTGTCAGTAAATTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAATAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCATTTTGATAATCTTGATGAACTGGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

48.047

98.084

0.471

Multiple sequence alignment