Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DTPSY_RS00885 Genome accession   NC_011992
Coordinates   201667..203205 (-) Length   512 a.a.
NCBI ID   WP_012655283.1    Uniprot ID   A0A2S4KK06
Organism   [Acidovorax] ebreus TPSY     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 196667..208205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTPSY_RS00865 (Dtpsy_0175) - 197101..197880 (+) 780 WP_012655279.1 ABC transporter ATP-binding protein -
  DTPSY_RS00870 (Dtpsy_0176) - 197911..198828 (-) 918 WP_012655280.1 LysR family transcriptional regulator -
  DTPSY_RS00875 (Dtpsy_0177) - 198938..199747 (+) 810 WP_012655281.1 SDR family oxidoreductase -
  DTPSY_RS00880 (Dtpsy_0178) - 199876..201621 (-) 1746 WP_012655282.1 methyl-accepting chemotaxis protein -
  DTPSY_RS00885 (Dtpsy_0179) comM 201667..203205 (-) 1539 WP_012655283.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DTPSY_RS00890 (Dtpsy_0180) - 203424..204155 (+) 732 WP_012655284.1 TorF family putative porin -
  DTPSY_RS00895 (Dtpsy_0181) glnK 204176..204514 (+) 339 WP_011803632.1 P-II family nitrogen regulator -
  DTPSY_RS00900 (Dtpsy_0182) amt 204561..205982 (+) 1422 WP_012655285.1 ammonium transporter -
  DTPSY_RS00905 (Dtpsy_0183) - 206122..207072 (+) 951 WP_012655286.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53610.39 Da        Isoelectric Point: 7.5333

>NTDB_id=32825 DTPSY_RS00885 WP_012655283.1 201667..203205(-) (comM) [[Acidovorax] ebreus TPSY]
MSLALVQSRALLGLHAPAVTVEVHLANGLPSFALVGLADVEVKEARERVRSALQNAGLEFPANKKITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAARLDGWEFAGELSLSGLLRPVRGALATSLALRALAQPVRTVLPPGSAEEAALVPGTEIYRA
HHLLDVVRQFVPVPPPNDDGADDGGWQRLQPAPPAPATDGPDLADVKGQAAAKRALEIAAAGGHGLLLVGPPGSGKSMLA
QRFAGLLPPMGVEQALESAAIASLAGRFSPAQWMQRTTASPHHSCSAIALVGGGSPPRPGEISLAHEGVLFLDEFPEFAR
SALEALREPLESGRITIARAAQRAEFPARFQLVAAMNPCPCGFAGSHQRACRCTPDQIARYQGKLSGPLLDRIDLHVEVP
ALPPEELLGAPPGEPSGAVRERVARAHERALQRQGKANQALQGQELEQMAALDAPAARFLQAAAARLAWSARSTHRALKV
ARTIADLSGCETVGAAHVAEAVQYRRALRAPA

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=32825 DTPSY_RS00885 WP_012655283.1 201667..203205(-) (comM) [[Acidovorax] ebreus TPSY]
ATGAGTCTTGCTTTGGTGCAAAGCCGCGCCCTGCTGGGCCTGCACGCGCCCGCCGTTACTGTGGAAGTACACCTGGCCAA
CGGGTTGCCCAGCTTCGCGCTGGTGGGCCTGGCCGATGTCGAGGTCAAGGAGGCGCGCGAGCGCGTGCGCTCCGCGCTGC
AGAACGCCGGGCTGGAATTCCCGGCCAACAAGAAGATCACCGTGAACCTGGCGCCGGCCGATCTGCCCAAAGACTCCGGC
CGCTTCGACCTGCCGATCGCGCTGGGCATCCTGGCCGCGAGCGGGCAGATCGACGCGGCCCGGTTGGACGGCTGGGAGTT
CGCCGGCGAGCTATCGCTGTCGGGCCTGCTGCGCCCGGTGCGCGGCGCCCTGGCGACCAGCTTGGCGCTGCGCGCGCTAG
CGCAGCCCGTACGCACGGTGCTTCCCCCCGGCAGCGCCGAAGAAGCTGCGCTGGTGCCGGGCACCGAGATCTACCGCGCG
CACCACCTGTTGGACGTGGTACGCCAGTTCGTGCCCGTGCCCCCGCCGAACGATGATGGCGCGGACGACGGCGGTTGGCA
GCGGCTGCAACCCGCGCCGCCGGCCCCGGCCACCGATGGCCCGGACCTGGCCGACGTGAAGGGGCAGGCCGCGGCCAAGC
GCGCACTGGAGATCGCTGCCGCAGGCGGGCACGGGCTGCTGCTCGTGGGGCCCCCGGGCTCGGGCAAGTCCATGCTGGCC
CAGCGTTTTGCCGGGCTGCTGCCCCCGATGGGGGTGGAGCAAGCGCTGGAGAGCGCGGCCATTGCCAGCCTGGCCGGGCG
CTTCAGCCCCGCGCAGTGGATGCAGCGCACCACAGCCAGCCCGCACCACAGCTGCAGCGCGATCGCGCTGGTGGGTGGGG
GCTCGCCGCCGCGCCCGGGCGAGATCTCGCTCGCGCACGAAGGCGTGCTCTTCCTCGATGAATTCCCCGAATTCGCCCGC
AGCGCCCTGGAGGCGCTGCGCGAGCCGCTGGAGAGCGGGCGCATCACCATTGCCCGGGCGGCGCAGCGCGCCGAGTTCCC
GGCGCGCTTTCAGCTCGTGGCGGCCATGAACCCCTGCCCCTGTGGTTTTGCGGGCTCGCACCAGCGCGCCTGCCGCTGCA
CACCCGACCAGATCGCGCGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCATGTGGAGGTGCCC
GCGCTGCCGCCCGAGGAACTGCTGGGCGCCCCGCCCGGCGAACCCAGCGGCGCCGTGCGCGAACGCGTGGCCCGCGCGCA
CGAACGAGCGCTCCAGCGCCAGGGCAAGGCCAACCAGGCATTGCAGGGTCAGGAGCTGGAACAGATGGCGGCGCTGGACG
CGCCGGCCGCGCGGTTCCTGCAGGCCGCGGCGGCGCGCCTGGCGTGGTCGGCGCGCAGCACGCACCGGGCCCTCAAGGTT
GCACGTACTATTGCCGATCTATCGGGCTGCGAGACCGTGGGCGCCGCCCATGTGGCCGAAGCCGTGCAATACCGGCGCGC
CCTGCGCGCACCGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-406)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S4KK06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.344

100

0.523
  comM Haemophilus influenzae Rd KW20

50.769

100

0.516
  comM Vibrio campbellii strain DS40M4

50.685

99.805

0.506
  comM Glaesserella parasuis strain SC1401

50.098

99.414

0.498
  comM Legionella pneumophila str. Paris

48.544

100

0.488
  comM Legionella pneumophila strain ERS1305867

48.544

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.164

100

0.432

Multiple sequence alignment