Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EHF44_RS04260 Genome accession   NZ_CP033969
Coordinates   555728..557266 (+) Length   512 a.a.
NCBI ID   WP_124682598.1    Uniprot ID   A0A3G8GXL0
Organism   Cupriavidus pauculus strain FDAARGOS_614     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 550728..562266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF44_RS04230 (EHF44_04230) - 550742..551197 (+) 456 WP_124682592.1 hypothetical protein -
  EHF44_RS04235 (EHF44_04235) - 551467..551862 (+) 396 WP_124682593.1 hypothetical protein -
  EHF44_RS04240 (EHF44_04240) - 552078..553613 (-) 1536 WP_124682594.1 ammonium transporter -
  EHF44_RS04245 (EHF44_04245) - 553646..553984 (-) 339 WP_124682595.1 P-II family nitrogen regulator -
  EHF44_RS04250 (EHF44_04250) - 554051..554854 (-) 804 WP_124682596.1 TorF family putative porin -
  EHF44_RS04255 (EHF44_04255) - 555382..555645 (+) 264 WP_124682597.1 accessory factor UbiK family protein -
  EHF44_RS04260 (EHF44_04260) comM 555728..557266 (+) 1539 WP_124682598.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EHF44_RS04265 (EHF44_04265) - 557509..558162 (-) 654 WP_124682599.1 LysE family transporter -
  EHF44_RS04270 (EHF44_04270) - 558191..558790 (-) 600 WP_124682600.1 hypothetical protein -
  EHF44_RS04275 (EHF44_04275) - 558908..559402 (+) 495 WP_124682601.1 thioredoxin -
  EHF44_RS04280 (EHF44_04280) - 559535..560071 (+) 537 WP_124682602.1 TlpA disulfide reductase family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54817.64 Da        Isoelectric Point: 7.3492

>NTDB_id=327513 EHF44_RS04260 WP_124682598.1 555728..557266(+) (comM) [Cupriavidus pauculus strain FDAARGOS_614]
MSLAVLRSRALNGIDAPPVSVEIHLANGLPAFNIVGLADTEVRESRERVRAALLNCEFEFPNRRITVNLAPADLPKESGR
FDLAIALGILAASGQLPATALDGFEFAGELSLAGDLRPVRGALAMAMGLARDNRARLAAGEPARAFIVATDNGPEAALVD
DLTVHAGATLRDICHHVGMLPEHPLPRARPAPPATDPGANPDMRDVRGQLQARRAMEVAAAGQHSVLLVGPPGTGKSMLA
QRFPALLPPMTESEALEAAAVLSLTPGGFQPSQWGRRPFRSPHHTASGPAMVGGGGNPRPGEISLAHHGVLFLDELPEFD
RRVLEVLREPLETGHITISRAAAQVDFPARFQFIAAMNPCPCGYLGHPTRMCRCTPDQVQRYQSRISGPLLDRVDLQIEV
PAQNHRDVLDGPPGEPSAAVRARAMDARARQIARQGTPNSELSGRQIDTHCPLTTDAQALLRGAMEKLGWSARAYFRVLK
VARTIADLADADTLDAGHVAEAIQYRRVLRTG

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=327513 EHF44_RS04260 WP_124682598.1 555728..557266(+) (comM) [Cupriavidus pauculus strain FDAARGOS_614]
ATGAGCCTCGCAGTCCTGCGCAGCCGCGCGCTGAACGGCATCGACGCGCCGCCCGTGTCCGTCGAAATCCACCTGGCGAA
TGGCCTGCCGGCCTTCAACATCGTCGGGCTGGCCGACACCGAAGTCCGCGAAAGCCGCGAGCGCGTGCGGGCGGCGCTGC
TGAACTGCGAGTTCGAATTCCCGAACCGCCGGATCACGGTCAACCTGGCGCCGGCCGACCTGCCCAAGGAGTCCGGCCGC
TTCGACCTTGCCATCGCGCTGGGCATCCTGGCGGCCAGCGGCCAGTTGCCGGCCACCGCGCTGGACGGCTTCGAGTTTGC
CGGCGAGCTGTCGCTGGCGGGCGACCTGCGGCCCGTGCGCGGCGCGCTGGCGATGGCGATGGGGCTGGCACGCGACAACC
GCGCCCGGCTGGCCGCCGGCGAGCCCGCGCGCGCGTTCATCGTCGCCACCGACAACGGCCCGGAAGCCGCACTGGTCGAT
GACCTGACCGTCCACGCCGGCGCCACGCTGCGCGACATCTGCCACCACGTCGGCATGCTGCCCGAGCACCCGCTGCCCCG
CGCCCGGCCGGCCCCGCCCGCCACCGACCCCGGCGCCAACCCCGACATGCGCGACGTGCGCGGCCAGCTACAGGCCCGCC
GGGCCATGGAAGTAGCCGCCGCGGGCCAGCACTCGGTGCTGCTGGTGGGCCCGCCCGGTACCGGCAAGTCGATGCTGGCG
CAGCGCTTTCCGGCCCTGCTGCCGCCGATGACCGAGAGCGAGGCGCTGGAAGCCGCCGCCGTGCTGAGCCTGACCCCGGG
CGGCTTCCAGCCGTCGCAATGGGGCCGGCGCCCGTTCCGCAGCCCCCACCACACGGCCAGCGGCCCGGCCATGGTGGGCG
GCGGCGGCAATCCGCGCCCCGGCGAGATTTCGCTGGCCCACCACGGCGTGCTGTTCCTCGACGAACTGCCCGAGTTCGAC
CGACGCGTGCTCGAAGTCCTGCGTGAGCCGCTGGAAACCGGCCACATCACCATCTCGCGCGCCGCCGCGCAGGTCGACTT
TCCCGCCCGCTTCCAGTTCATCGCCGCCATGAACCCGTGCCCATGCGGCTACCTGGGCCATCCCACGCGCATGTGCCGCT
GCACGCCCGACCAGGTGCAGCGCTACCAGTCGCGCATCTCCGGCCCGCTGCTGGACCGCGTGGACCTGCAGATCGAAGTG
CCCGCCCAGAACCACCGCGACGTGCTGGACGGCCCGCCCGGCGAACCCAGCGCCGCCGTCCGCGCCCGCGCCATGGACGC
CCGCGCGCGCCAGATCGCCCGCCAGGGCACGCCCAACAGCGAACTGTCCGGCCGCCAGATCGACACCCACTGCCCGCTGA
CCACCGACGCCCAGGCCTTGCTGCGCGGCGCCATGGAAAAGCTGGGCTGGTCCGCCCGCGCGTACTTCCGCGTACTGAAG
GTCGCCCGCACCATCGCCGACCTGGCCGACGCCGACACACTCGACGCCGGCCACGTGGCCGAGGCCATCCAGTACCGGCG
GGTGCTGCGGACGGGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G8GXL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

49.513

100

0.496
  comM Vibrio cholerae strain A1552

49.507

99.023

0.49
  comM Glaesserella parasuis strain SC1401

48.343

100

0.484
  comM Vibrio campbellii strain DS40M4

48.915

99.023

0.484
  comM Legionella pneumophila str. Paris

47.75

99.805

0.477
  comM Legionella pneumophila strain ERS1305867

47.75

99.805

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.411

100

0.438

Multiple sequence alignment