Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EG882_RS12660 Genome accession   NZ_CP033967
Coordinates   2435392..2436000 (-) Length   202 a.a.
NCBI ID   WP_094031925.1    Uniprot ID   -
Organism   Bacillus velezensis strain 1B-23     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2430392..2441000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG882_RS12640 (EG882_12640) dnaD 2430628..2431326 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  EG882_RS12645 (EG882_12645) nth 2431345..2432004 (+) 660 WP_007612187.1 endonuclease III -
  EG882_RS12650 (EG882_12650) - 2432001..2432492 (+) 492 WP_124692876.1 YpoC family protein -
  EG882_RS12655 (EG882_12655) - 2432570..2435353 (-) 2784 WP_122504091.1 PBP1A family penicillin-binding protein -
  EG882_RS12660 (EG882_12660) recU 2435392..2436000 (-) 609 WP_094031925.1 Holliday junction resolvase RecU Machinery gene
  EG882_RS12665 (EG882_12665) - 2436042..2437004 (+) 963 WP_014418234.1 DUF2515 domain-containing protein -
  EG882_RS12670 (EG882_12670) sspM 2437048..2437152 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  EG882_RS12675 (EG882_12675) - 2437358..2437603 (+) 246 WP_007409491.1 DUF5446 family protein -
  EG882_RS12680 (EG882_12680) - 2437649..2438017 (+) 369 WP_098081526.1 YppE family protein -
  EG882_RS12685 (EG882_12685) - 2438056..2438238 (-) 183 WP_003153532.1 YppF family protein -
  EG882_RS12690 (EG882_12690) - 2438425..2438859 (+) 435 WP_025284916.1 YppG family protein -
  EG882_RS12695 (EG882_12695) - 2438889..2439302 (-) 414 WP_017418017.1 hypothetical protein -
  EG882_RS12700 (EG882_12700) - 2439441..2439947 (+) 507 WP_012117833.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23694.77 Da        Isoelectric Point: 9.5849

>NTDB_id=327482 EG882_RS12660 WP_094031925.1 2435392..2436000(-) (recU) [Bacillus velezensis strain 1B-23]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRRDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=327482 EG882_RS12660 WP_094031925.1 2435392..2436000(-) (recU) [Bacillus velezensis strain 1B-23]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAGAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886

Multiple sequence alignment