Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   HMPREF0837_RS06670 Genome accession   NC_014251
Coordinates   1290079..1290759 (-) Length   226 a.a.
NCBI ID   WP_000286922.1    Uniprot ID   Q97QW0
Organism   Streptococcus pneumoniae TCH8431/19A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1285079..1295759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0837_RS06635 (HMPREF0837_11387) - 1285310..1285879 (+) 570 WP_000681293.1 CYTH domain-containing protein -
  HMPREF0837_RS06640 (HMPREF0837_11388) - 1285992..1286951 (+) 960 WP_001283813.1 ribose-phosphate diphosphokinase -
  HMPREF0837_RS06645 (HMPREF0837_11389) - 1286961..1288076 (+) 1116 WP_000639664.1 cysteine desulfurase family protein -
  HMPREF0837_RS06650 (HMPREF0837_11390) - 1288081..1288428 (+) 348 WP_000863509.1 DUF1831 domain-containing protein -
  HMPREF0837_RS06655 (HMPREF0837_11391) - 1288436..1288651 (+) 216 WP_000462487.1 DUF4649 family protein -
  HMPREF0837_RS06660 (HMPREF0837_11392) - 1288734..1289375 (+) 642 WP_000653403.1 redox-sensing transcriptional repressor Rex -
  HMPREF0837_RS06665 (HMPREF0837_11393) - 1289393..1290082 (+) 690 WP_000743330.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  HMPREF0837_RS06670 (HMPREF0837_11394) radC 1290079..1290759 (-) 681 WP_000286922.1 DNA repair protein RadC Machinery gene
  HMPREF0837_RS06675 (HMPREF0837_11395) pcrA 1290802..1293093 (-) 2292 WP_000992855.1 DNA helicase PcrA -
  HMPREF0837_RS06695 (HMPREF0837_11398) - 1294470..1295330 (-) 861 WP_000631543.1 methionyl aminopeptidase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25535.53 Da        Isoelectric Point: 7.1203

>NTDB_id=32692 HMPREF0837_RS06670 WP_000286922.1 1290079..1290759(-) (radC) [Streptococcus pneumoniae TCH8431/19A]
MYSISFQEDSLLPRERLAKEGVEALSNQELLAILLRTGTRQASVFEIAQKVLNNLSSLTDLKKMTLQELQSLSGIGRVKA
IELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLNTQNQIIHQQTIFIGSVTRSIAEPREILH
YAIKHMATSLILVHNHPSGAVAPSQNDDHVTKLVKEACELMGIVLLDHLIVSHSNYFSYREKTDLI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=32692 HMPREF0837_RS06670 WP_000286922.1 1290079..1290759(-) (radC) [Streptococcus pneumoniae TCH8431/19A]
ATGTACAGTATTTCATTCCAAGAAGATTCACTATTACCAAGAGAAAGGCTGGCCAAGGAAGGAGTTGAAGCGCTTAGTAA
CCAAGAGTTGCTAGCTATTTTACTCAGGACAGGAACACGTCAAGCTAGCGTTTTTGAAATTGCCCAAAAAGTCTTGAACA
ATCTTTCAAGCCTAACGGATTTGAAAAAAATGACCCTGCAGGAATTGCAGAGTTTGTCTGGTATTGGGCGTGTTAAGGCC
ATAGAATTACAAGCTATGATTGAACTGGGGCATCGTATTCACAAACACGAGACTCTTGAAATGGAAAGTATTCTCAGCAG
TCAAAAGTTGGCCAAGAAGATGCAGCAGGAATTAGGGGATAAAAAACAAGAGCACCTGGTGGCACTCTATCTCAATACTC
AAAATCAAATCATCCATCAGCAGACCATTTTTATCGGTTCTGTAACTCGTAGTATCGCTGAACCGCGAGAGATTCTGCAC
TATGCAATCAAGCATATGGCGACTTCTCTTATCTTGGTCCACAATCATCCTTCAGGAGCGGTAGCGCCTAGCCAAAATGA
TGATCATGTCACTAAACTTGTTAAAGAAGCCTGCGAACTGATGGGGATTGTTCTCTTGGACCATTTGATTGTCTCTCATT
CTAATTACTTTAGTTATCGTGAAAAGACAGATTTAATCTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-81)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97QW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

100

100

1
  radC Streptococcus pneumoniae R6

99.558

100

0.996
  radC Streptococcus pneumoniae D39

99.558

100

0.996
  radC Streptococcus gordonii str. Challis substr. CH1

76.106

100

0.761
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

48.095

92.92

0.447

Multiple sequence alignment