Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EGM96_RS01395 Genome accession   NZ_CP033876
Coordinates   298524..300011 (+) Length   495 a.a.
NCBI ID   WP_031980184.1    Uniprot ID   A0AAP1QXD2
Organism   Acinetobacter baumannii strain WU_164     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 293524..305011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGM96_RS01370 (EGM96_01370) ribD 294440..295525 (-) 1086 WP_001292498.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  EGM96_RS01375 (EGM96_01375) nrdR 295541..295999 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  EGM96_RS01380 (EGM96_01380) - 296158..297555 (-) 1398 WP_000738520.1 ammonium transporter -
  EGM96_RS01385 (EGM96_01385) glnK 297613..297951 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  EGM96_RS01390 (EGM96_01390) - 298231..298458 (+) 228 WP_000894500.1 accessory factor UbiK family protein -
  EGM96_RS01395 (EGM96_01395) comM 298524..300011 (+) 1488 WP_031980184.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EGM96_RS01400 (EGM96_01400) - 300008..301460 (-) 1453 Protein_269 PLP-dependent aminotransferase family protein -
  EGM96_RS01405 (EGM96_01405) - 301572..302348 (+) 777 WP_000845034.1 aldolase -
  EGM96_RS01410 (EGM96_01410) - 302364..303242 (+) 879 WP_031959778.1 dihydrodipicolinate synthase family protein -
  EGM96_RS01415 (EGM96_01415) - 303285..304106 (-) 822 WP_031959777.1 TorF family putative porin -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54539.46 Da        Isoelectric Point: 7.2551

>NTDB_id=326706 EGM96_RS01395 WP_031980184.1 298524..300011(+) (comM) [Acinetobacter baumannii strain WU_164]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTLHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=326706 EGM96_RS01395 WP_031980184.1 298524..300011(+) (comM) [Acinetobacter baumannii strain WU_164]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGATTACCCTCTCTAACTATTGTAGGCTTAGCGGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTAGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCACGCACAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACTACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTCCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCGGCTCGGCAAATTACTTATCCGGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAATCGTATATCGGGAC
CGTTACTCGATCGTATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACGCCTGCAGAA
GATTCTACAACTGTGCGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGATTGTTTGAATCAGGCCCT
CTCGCCCAAACAACTGGAACAATATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACTATTGCTGATTTGGCCCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.411

100

0.515
  comM Glaesserella parasuis strain SC1401

50.501

100

0.509
  comM Haemophilus influenzae Rd KW20

49.9

100

0.503
  comM Legionella pneumophila str. Paris

49.398

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.398

100

0.497
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.6

100

0.471

Multiple sequence alignment