Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EGY12_RS06610 Genome accession   NZ_CP033831
Coordinates   1339432..1340955 (+) Length   507 a.a.
NCBI ID   WP_123892945.1    Uniprot ID   -
Organism   Serratia sp. FDAARGOS_506     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1334432..1345955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY12_RS06585 (EGY12_06590) - 1334632..1335558 (-) 927 WP_016930475.1 branched-chain amino acid transaminase -
  EGY12_RS06590 (EGY12_06595) ilvM 1335582..1335839 (-) 258 WP_004929955.1 acetolactate synthase 2 small subunit -
  EGY12_RS06595 (EGY12_06600) ilvG 1335836..1337482 (-) 1647 WP_123892943.1 acetolactate synthase 2 catalytic subunit -
  EGY12_RS06600 (EGY12_06605) ilvL 1337625..1337723 (-) 99 WP_013814970.1 ilv operon leader peptide -
  EGY12_RS06605 (EGY12_06610) - 1337857..1339089 (-) 1233 WP_123892944.1 MFS transporter -
  EGY12_RS06610 (EGY12_06615) comM 1339432..1340955 (+) 1524 WP_123892945.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EGY12_RS06615 (EGY12_06620) - 1340984..1341322 (-) 339 WP_019455272.1 DUF413 domain-containing protein -
  EGY12_RS06620 (EGY12_06625) hdfR 1341442..1342269 (+) 828 WP_049198322.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54577.89 Da        Isoelectric Point: 7.1914

>NTDB_id=326210 EGY12_RS06610 WP_123892945.1 1339432..1340955(+) (comM) [Serratia sp. FDAARGOS_506]
MSLAVIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGSLRAVRGAIPAALAAADAGRQLILSTDNTAEVGLIAQSQSHTARHL
LEVCAFLLGQGELPVAAMPPAADTARENADLLDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
HEALESLAVASLQHHIPTALLWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYQGLHNRASPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSQRKTH
GESSDQVRERVQLARTRQLERAGKVNALLSNREVERDCVLQAADAEFLETTLNALGLSVRAWQRILKVARTLADLAGDAE
LDRCHLSEALGYRCMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=326210 EGY12_RS06610 WP_123892945.1 1339432..1340955(+) (comM) [Serratia sp. FDAARGOS_506]
ATGTCATTGGCGGTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCAGTAACGGTGGAGGTGCATATCAGCAA
TGGCTTGCCCGGCCTGACGCTGGTCGGTCTGCCGGAAACCACGGTGAAAGAGGCGCGCGACCGAGTGCGCAGCGCCCTGA
TCAACAACGGCTTCACCTTTCCCGCCCGGCGCATCACCGTCAATTTGGCGCCGGCCGATCTGCCGAAAGAAGGCGGGCGT
TACGATCTGCCCATAGCGCTGGCGATCCTCGCCGCCTCCGAACAATTGCCTCTCGCACCGTTGGCACGTTACGAGTTTCT
TGGCGAGCTCGCACTGTCCGGCTCGCTGCGTGCGGTCAGGGGCGCGATCCCGGCGGCGCTGGCGGCGGCTGATGCAGGGC
GACAACTGATCCTCTCGACGGACAATACCGCCGAGGTCGGCTTGATCGCACAGTCACAATCCCATACCGCCCGGCACCTG
TTGGAAGTCTGCGCCTTTCTGCTCGGCCAGGGCGAATTGCCGGTGGCAGCCATGCCTCCCGCTGCGGACACCGCCCGCGA
AAATGCCGACCTGCTCGACATCATTGGTCAGGAGCAGGCCAAGCGGGCCCTGGAGATCGCCGCCGCCGGCGGGCATAACC
TGCTGCTGATTGGGCCGCCGGGCACCGGTAAAACCATGCTGGCCAGCCGCCTGACGGGCTTGCTGCCGCCGCTGACGGAA
CATGAGGCGCTGGAAAGCCTGGCGGTCGCCAGCTTGCAGCATCATATCCCCACCGCGCTACTATGGCGCCAGAGGCCGTT
TCGCGCACCGCATCACAGCGCATCGATGGCGGCGTTGGTCGGCGGCGGCTCACTCCCGCGTCCGGGCGAGATCTCTATGG
CGCATAACGGCGTACTGTTTTTGGATGAGCTACCGGAATTCGAGCGTAAGGTGCTGGATGCTCTGCGTGAGCCGCTGGAG
TCCGGCGAGATCGTGATTTCACGCGCCAACGCCAAGGTCTGTTTCCCCGCCAGAGTGCAGTTGATCGCGGCAATGAACCC
CAGCCCGACAGGGCATTATCAGGGGTTACACAATCGCGCCTCACCGCAGCAGGTGTTGCGCTATCTGGCCCGGCTGTCAG
GGCCTTTTCTCGATCGCTTCGATCTGTCTATCGAAGTGCCGCTGTTACCGCCAGGTACGCTCAGTCAGCGGAAAACGCAT
GGAGAAAGCAGTGATCAAGTGCGGGAAAGGGTTCAGCTGGCGCGCACCCGACAGCTCGAACGCGCCGGGAAAGTCAACGC
GCTGCTGAGCAACCGTGAGGTGGAGAGGGATTGCGTTCTGCAGGCGGCTGACGCCGAGTTTTTGGAGACGACATTAAACG
CGCTGGGGTTGTCGGTCCGCGCCTGGCAGCGCATCTTGAAAGTAGCACGCACGCTGGCGGACTTGGCAGGGGATGCTGAG
CTCGATAGGTGCCACCTCAGTGAAGCGCTGGGCTATCGCTGTATGGATCGTCTGTTGTTACAGCTGCATCGTAGTCTGGA
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.81

99.803

0.657
  comM Glaesserella parasuis strain SC1401

65.089

100

0.651
  comM Vibrio cholerae strain A1552

65.339

99.014

0.647
  comM Vibrio campbellii strain DS40M4

64.343

99.014

0.637
  comM Legionella pneumophila str. Paris

51.004

98.225

0.501
  comM Legionella pneumophila strain ERS1305867

51.004

98.225

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.618

100

0.45

Multiple sequence alignment