Detailed information NTG0326023

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FNE87_RS05755
• Genome accession: NZ_CP041416
• Coordinates: 1211133..1212125 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain STEC711
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1206133..1217125

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNE87_RS05725 (FNE87_05925)	ispD	1206194..1206904 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FNE87_RS05730 (FNE87_05930)	ispF	1206904..1207383 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FNE87_RS05735 (FNE87_05935)	truD	1207380..1208429 (+)	1050	WP_000568921.1	tRNA pseudouridine(13) synthase TruD	-
FNE87_RS05740 (FNE87_05940)	surE	1208410..1209171 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FNE87_RS05745 (FNE87_05945)	pcm	1209165..1209791 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FNE87_RS05750 (FNE87_05950)	nlpD	1209976..1211070 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FNE87_RS05755 (FNE87_05955)	rpoS	1211133..1212125 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FNE87_RS05760 (FNE87_05960)	-	1212246..1212653 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
FNE87_RS05765 (FNE87_05965)	-	1212800..1213393 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FNE87_RS05770 (FNE87_05970)	-	1213393..1214820 (+)	1428	WP_161620255.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FNE87_RS05775 (FNE87_05975)	-	1214831..1215067 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FNE87_RS05780 (FNE87_05980)	ygbN	1215106..1216470 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=326023 FNE87_RS05755 WP_000081550.1 1211133..1212125(+) (rpoS) [Escherichia coli strain STEC711]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=326023 FNE87_RS05755 WP_000081550.1 1211133..1212125(+) (rpoS) [Escherichia coli strain STEC711]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715