Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LPA_RS09350 Genome accession   NC_014125
Coordinates   2087709..2088203 (-) Length   164 a.a.
NCBI ID   WP_013101531.1    Uniprot ID   -
Organism   Legionella pneumophila 2300/99 Alcoy     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2082709..2093203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPA_RS09335 (lpa_02603) recX 2084689..2085141 (-) 453 WP_010947526.1 recombination regulator RecX -
  LPA_RS09340 (lpa_02604) recA 2085134..2086180 (-) 1047 WP_010947527.1 recombinase RecA Machinery gene
  LPA_RS09345 (lpa_02606) - 2086482..2087417 (-) 936 WP_010947529.1 lpg1803 family Dot/Icm T4SS effector -
  LPA_RS09350 (lpa_02607) cinA 2087709..2088203 (-) 495 WP_013101531.1 CinA family protein Machinery gene
  LPA_RS09355 (lpa_02609) - 2088281..2088478 (-) 198 WP_011215777.1 hypothetical protein -
  LPA_RS09360 (lpa_02610) mutS 2088826..2091366 (+) 2541 WP_027223917.1 DNA mismatch repair protein MutS -
  LPA_RS09365 (lpa_02611) - 2091379..2093067 (+) 1689 WP_041932047.1 autotransporter assembly complex family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17512.07 Da        Isoelectric Point: 6.7364

>NTDB_id=32587 LPA_RS09350 WP_013101531.1 2087709..2088203(-) (cinA) [Legionella pneumophila 2300/99 Alcoy]
MSHFSILVEEIAAYLKKAKWQLVTAESCTGGLIAACLTEIPGSSNWFERGFVTYSNLAKEEMLAVAHELIQTHGAVSEEV
ALAMAAGALQHSMGNIAVSVTGIAGPEGGSIEKPVGTVCFAWAVHHQFQQTSRQQFTGSRQEIRLSACQYALNGVLSTLK
KVCG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=32587 LPA_RS09350 WP_013101531.1 2087709..2088203(-) (cinA) [Legionella pneumophila 2300/99 Alcoy]
ATGAGTCATTTCTCGATACTGGTTGAAGAAATAGCTGCCTATTTAAAAAAGGCCAAATGGCAATTAGTGACTGCGGAATC
TTGTACTGGTGGTTTAATTGCTGCTTGCCTTACGGAAATACCTGGAAGCTCAAATTGGTTTGAGCGTGGTTTTGTTACTT
ATAGTAATTTAGCTAAAGAGGAAATGCTTGCTGTTGCTCACGAGCTAATACAAACTCATGGGGCAGTCAGTGAAGAAGTG
GCTTTGGCTATGGCTGCTGGTGCGTTACAACATAGTATGGGTAATATCGCTGTATCAGTTACTGGTATCGCAGGTCCAGA
AGGAGGCAGTATTGAAAAACCAGTAGGTACTGTATGCTTTGCCTGGGCAGTTCACCATCAATTTCAACAAACATCAAGAC
AGCAATTCACTGGAAGTCGGCAAGAAATACGTTTGTCTGCCTGTCAATATGCTTTAAATGGAGTTCTTTCTACTCTTAAA
AAAGTCTGTGGCTAA

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae D39

38.217

95.732

0.366
  cinA Streptococcus pneumoniae R36A

38.217

95.732

0.366
  cinA Streptococcus pneumoniae Rx1

38.217

95.732

0.366
  cinA Streptococcus pneumoniae R6

38.217

95.732

0.366

Multiple sequence alignment