Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EGY04_RS16735 Genome accession   NZ_CP033800
Coordinates   3069686..3071206 (-) Length   506 a.a.
NCBI ID   WP_123923181.1    Uniprot ID   -
Organism   Enterobacter roggenkampii strain FDAARGOS_523     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3064686..3076206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY04_RS16725 (EGY04_16740) hdfR 3068378..3069199 (-) 822 WP_021242824.1 HTH-type transcriptional regulator HdfR -
  EGY04_RS16730 (EGY04_16745) - 3069318..3069656 (+) 339 WP_008501577.1 DUF413 domain-containing protein -
  EGY04_RS16735 (EGY04_16750) comM 3069686..3071206 (-) 1521 WP_123923181.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EGY04_RS16740 (EGY04_16755) ilvL 3071547..3071645 (+) 99 WP_001311244.1 ilv operon leader peptide -
  EGY04_RS25910 ilvX 3071732..3071782 (+) 51 WP_166792073.1 peptide IlvX -
  EGY04_RS16745 (EGY04_16760) ilvG 3071785..3073431 (+) 1647 WP_123923182.1 acetolactate synthase 2 catalytic subunit -
  EGY04_RS16750 (EGY04_16765) ilvM 3073428..3073691 (+) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  EGY04_RS16755 (EGY04_16770) ilvE 3073710..3074639 (+) 930 WP_021242827.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54744.68 Da        Isoelectric Point: 7.2808

>NTDB_id=325792 EGY04_RS16735 WP_123923181.1 3069686..3071206(-) (comM) [Enterobacter roggenkampii strain FDAARGOS_523]
MSLSVVYTRAALGVKAPLVSVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDEAVADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGNYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAKVRGRVIAAQARQYARQNRLNARLDNAGIRQFCSLNSEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=325792 EGY04_RS16735 WP_123923181.1 3069686..3071206(-) (comM) [Enterobacter roggenkampii strain FDAARGOS_523]
ATGTCACTGTCAGTTGTTTATACACGTGCGGCTCTCGGGGTAAAGGCACCGCTTGTTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCCAAAGAGGGCGGGCGA
TACGATTTACCTATCGCAATTGCGCTTCTCGCGGCTTCTGAGCAGCTTACTACGACCAGGCTAGGCTCGTACGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCATTGAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATTCGTGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATTGCCGAAAAGGGGTGTCTCATCGCCGGGCATCTT
CAGGAAGTATGTGCCTGGCTGGAAGGCCGACATGAACTGTCCGAGCCGGAGGAGTGCGACGAGGCTGTAGCAGATGCGCC
AGAAGATCTCAGTGAGATCATGGGACAGGAGCAAGGTAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTCC
TGCTGATTGGCCCGCCTGGTACAGGTAAAACGATGCTGGCGAGCAGGCTGAGCGGGTTGCTCCCGCCGCTCAATAATCAT
GAAGCGCTGGAAAGCGCTGCCATATATAGCCTCATCAGTTCGGCATCGTTGCAAAAACAGTGGCGCCGTCGCCCTTTTCG
TTCCCCACATCATAGCGCTTCACTGACGGCAATGGTCGGCGGTGGGTCTATCCCCGGACCGGGTGAGATTTCACTGGCAC
ACAATGGCATTCTGTTTCTTGATGAGTTGCCTGAGTTTGAGCGTCGCGTGCTGGATGCACTGAGAGAACCTATTGAATCT
GGTGAAATACATATCTCGCGCACGCGGGCCAAAATAAGCTATCCCGCGCAGTTTCAACTGGTCGCTGCGATGAACCCCAG
CCCCACGGGGAATTATCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTTTCCGGCC
CATTCCTCGACCGTTTCGATTTGTCTCTCGAAATCCCCCTTCCGCCGCCGGGCCTGCTCAGGCAGACGGGCATAACGGGT
GAGAGCTCAGCAAAAGTGCGCGGGCGGGTGATCGCTGCCCAGGCACGACAATACGCCCGTCAAAACAGGCTGAATGCTCG
GCTTGATAATGCCGGGATCCGGCAGTTTTGTTCGCTTAATAGTGAAGATGCAGGATGGCTTGAGGAGACGTTGACGCGCT
TTGGGCTGTCTATACGTGCGTGGCAACGTTTGCTAAAAGTGGCCAGAACCATTGCTGACGTGGAGGGATGTACTGACATT
GAGAGGAAACACTTGCAGGAGGCGCTGAGTTACCGCGCTATCGATCGTTTGCTGCTGCACCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Vibrio campbellii strain DS40M4

58.765

99.209

0.583
  comM Vibrio cholerae strain A1552

58.648

99.407

0.583
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Legionella pneumophila str. Paris

50.503

98.221

0.496
  comM Legionella pneumophila strain ERS1305867

50.503

98.221

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441

Multiple sequence alignment