Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EGY04_RS14085 Genome accession   NZ_CP033800
Coordinates   2509003..2509527 (-) Length   174 a.a.
NCBI ID   WP_123923027.1    Uniprot ID   -
Organism   Enterobacter roggenkampii strain FDAARGOS_523     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2504003..2514527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY04_RS14060 (EGY04_14075) - 2504522..2505193 (-) 672 WP_123923026.1 glutathione S-transferase family protein -
  EGY04_RS14065 (EGY04_14080) soxR 2505568..2506026 (-) 459 WP_008503388.1 redox-sensitive transcriptional activator SoxR -
  EGY04_RS14070 (EGY04_14085) soxS 2506125..2506451 (+) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  EGY04_RS14075 (EGY04_14090) - 2506458..2508023 (-) 1566 WP_023293514.1 EAL domain-containing protein -
  EGY04_RS14080 (EGY04_14095) - 2508660..2508941 (+) 282 WP_008503385.1 YjcB family protein -
  EGY04_RS14085 (EGY04_14100) ssb 2509003..2509527 (-) 525 WP_123923027.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EGY04_RS14095 (EGY04_14110) uvrA 2509779..2512601 (+) 2823 WP_123923028.1 excinuclease ABC subunit UvrA -
  EGY04_RS14100 (EGY04_14115) - 2512605..2512958 (-) 354 WP_123923029.1 MmcQ/YjbR family DNA-binding protein -
  EGY04_RS14105 (EGY04_14120) - 2512961..2513377 (-) 417 WP_008503381.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EGY04_RS14110 (EGY04_14125) aphA 2513491..2514204 (-) 714 WP_023293517.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18602.61 Da        Isoelectric Point: 5.7683

>NTDB_id=325787 EGY04_RS14085 WP_123923027.1 2509003..2509527(-) (ssb) [Enterobacter roggenkampii strain FDAARGOS_523]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQHQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=325787 EGY04_RS14085 WP_123923027.1 2509003..2509527(-) (ssb) [Enterobacter roggenkampii strain FDAARGOS_523]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCATCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCGCCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.782
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368

Multiple sequence alignment