Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EFZ62_RS19570 | Genome accession | NZ_CP033623 |
| Coordinates | 4126104..4126634 (-) | Length | 176 a.a. |
| NCBI ID | WP_004936793.1 | Uniprot ID | A0AAW6X7L8 |
| Organism | Serratia marcescens strain N10A28 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4121104..4131634
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EFZ62_RS19540 (EFZ62_19605) | - | 4122165..4122572 (-) | 408 | WP_159318682.1 | VOC family protein | - |
| EFZ62_RS19545 (EFZ62_19610) | - | 4122620..4123288 (-) | 669 | WP_049201475.1 | glutathione S-transferase family protein | - |
| EFZ62_RS19550 (EFZ62_19615) | - | 4123285..4123728 (-) | 444 | WP_047570370.1 | lipocalin-like domain-containing protein | - |
| EFZ62_RS19555 (EFZ62_19620) | bhsA | 4123925..4124185 (+) | 261 | WP_025304435.1 | multiple stress resistance protein BhsA | - |
| EFZ62_RS19560 (EFZ62_19625) | - | 4124241..4125158 (-) | 918 | WP_049201481.1 | LysR family transcriptional regulator | - |
| EFZ62_RS19565 (EFZ62_19630) | - | 4125291..4126040 (+) | 750 | WP_038874304.1 | 3-oxoacyl-ACP reductase family protein | - |
| EFZ62_RS19570 (EFZ62_19635) | ssb | 4126104..4126634 (-) | 531 | WP_004936793.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| EFZ62_RS19575 (EFZ62_19645) | uvrA | 4126912..4129740 (+) | 2829 | WP_049201484.1 | excinuclease ABC subunit UvrA | - |
| EFZ62_RS19580 (EFZ62_19650) | - | 4130070..4130876 (+) | 807 | WP_204276035.1 | MipA/OmpV family protein | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 18808.71 Da Isoelectric Point: 5.2358
>NTDB_id=324542 EFZ62_RS19570 WP_004936793.1 4126104..4126634(-) (ssb) [Serratia marcescens strain N10A28]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=324542 EFZ62_RS19570 WP_004936793.1 4126104..4126634(-) (ssb) [Serratia marcescens strain N10A28]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCAGCGCAGAACAGCGCTCCG
GCGACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCAGCGCAGAACAGCGCTCCG
GCGACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
76.243 |
100 |
0.784 |
| ssb | Glaesserella parasuis strain SC1401 |
59.14 |
100 |
0.625 |
| ssb | Neisseria meningitidis MC58 |
46.591 |
100 |
0.466 |
| ssb | Neisseria gonorrhoeae MS11 |
46.591 |
100 |
0.466 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.158 |
100 |
0.364 |