Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FIP52_RS07015 Genome accession   NZ_CP041029
Coordinates   1454057..1456057 (+) Length   666 a.a.
NCBI ID   WP_014937655.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain WJ4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1449057..1461057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIP52_RS06985 (FIP52_06985) - 1449368..1449709 (-) 342 WP_236627958.1 Arm DNA-binding domain-containing protein -
  FIP52_RS06995 (FIP52_06995) rseP 1450089..1451411 (-) 1323 WP_014937659.1 RIP metalloprotease RseP -
  FIP52_RS07000 (FIP52_07000) - 1451518..1451946 (-) 429 WP_014937658.1 DUF6646 family protein -
  FIP52_RS07005 (FIP52_07005) - 1452028..1452789 (+) 762 WP_014937657.1 amidohydrolase -
  FIP52_RS07010 (FIP52_07010) - 1452853..1453899 (-) 1047 WP_014937656.1 Cj0069 family protein -
  FIP52_RS07015 (FIP52_07015) uvrB 1454057..1456057 (+) 2001 WP_014937655.1 excinuclease ABC subunit UvrB Machinery gene
  FIP52_RS07020 (FIP52_07020) - 1456083..1456607 (+) 525 WP_004916204.1 Crp/Fnr family transcriptional regulator -
  FIP52_RS07025 (FIP52_07025) - 1456658..1457224 (+) 567 WP_014937654.1 DinB family protein -
  FIP52_RS07030 (FIP52_07030) - 1457715..1458950 (+) 1236 WP_014937653.1 OmpP1/FadL family transporter -
  FIP52_RS07035 (FIP52_07035) - 1458963..1460423 (+) 1461 WP_014937652.1 hydrolase GDSL -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 75943.95 Da        Isoelectric Point: 5.2610

>NTDB_id=324453 FIP52_RS07015 WP_014937655.1 1454057..1456057(+) (uvrB) [Riemerella anatipestifer strain WJ4]
MKFKLHSEFKPTGDQPQAIDKLVSGIEQGQPYQTLLGVTGSGKTFTIANVVNTVQRPTIVLAHNKTLAAQLFMEFKEFFP
ENAVEYFVSYYDYYQPEAYIASTGTYIEKDLSINEEVEKLRLSATTSLLSGRRDVLIVASVSCIYGIGNPTEFNKSLIEL
ELQSKISRTDLLHKLVSALYSRAVNEFVRGSFRVKGDVVDIFPAYADNAVRIRFFGNEIDKIQSFDPVSGNIMGDFNKIN
IYPANLFVTSKETMNDALRKIQDDLMRQVDFLNKIGKNLEAKRLKERTELDLEMIKELGYCSGIENYSRYMDGRNPGSRP
FCLLDYFPNDYLMVIDESHVTIPQVHAMYGGDRSRKENLVEYGFRLPAAMDNRPLKFEEFESMQNQVIYVSATPADYELE
KTQGEYVEQIIRPTGLLDPIIEVRPTLNQIDDLMEEIQKRAEEDERVLVTTLTKKMAEELTKYFTKFGIRTRYIHSDVDT
LERIQIMQDLRAGLFDVLVGVNLLREGLDLPEVSLVAILDADKEGMLRSRRSMIQTVGRAARNINGKAIMYADKMTKSMQ
ATIDETNYRREKQMSYNEANGLIPQPLNKKISDVLVGHTPDFPKQEYIQKEIVKQVAETKVSYGNAEDLEKIIAEKQKQM
EVAAKQLDFILAAKLRDEIKALKGTP

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=324453 FIP52_RS07015 WP_014937655.1 1454057..1456057(+) (uvrB) [Riemerella anatipestifer strain WJ4]
ATGAAATTTAAGCTCCACTCCGAATTTAAACCTACTGGAGACCAGCCACAAGCGATTGATAAATTGGTCTCTGGGATAGA
ACAAGGTCAGCCTTACCAAACTCTGCTAGGAGTTACAGGCTCTGGTAAAACCTTTACCATTGCCAATGTAGTGAATACTG
TCCAACGACCTACTATTGTTCTTGCTCATAATAAGACATTAGCTGCCCAGCTATTTATGGAGTTTAAGGAATTTTTTCCT
GAAAATGCAGTAGAGTATTTTGTATCCTATTACGATTATTACCAGCCTGAAGCGTACATTGCCAGTACGGGAACTTACAT
AGAAAAAGACCTTAGTATAAATGAGGAGGTAGAGAAATTAAGGCTTTCTGCTACGACAAGTCTTCTTTCAGGGAGGCGAG
ATGTGCTTATAGTGGCTTCGGTGTCGTGTATTTATGGTATTGGTAACCCTACAGAGTTTAATAAATCTCTTATAGAGCTA
GAACTTCAATCCAAAATTTCTAGGACAGATTTGCTCCACAAGCTAGTTAGTGCACTTTACTCTAGGGCGGTTAATGAATT
TGTACGAGGAAGTTTCAGGGTTAAAGGAGATGTGGTAGATATTTTTCCCGCTTATGCCGATAATGCAGTTAGAATAAGAT
TTTTTGGTAACGAGATTGATAAAATCCAAAGTTTTGACCCAGTTTCAGGGAATATTATGGGGGATTTTAATAAAATTAAT
ATTTATCCAGCCAATCTATTCGTTACCTCAAAAGAAACGATGAACGACGCCCTTAGGAAAATTCAAGATGACCTTATGAG
GCAAGTAGATTTTTTAAATAAAATAGGAAAAAACCTAGAAGCCAAGCGTTTGAAAGAACGAACAGAATTAGATTTAGAAA
TGATAAAAGAGCTGGGCTATTGTTCTGGCATAGAGAATTATTCTAGGTATATGGACGGTAGAAATCCTGGTTCTCGCCCG
TTTTGTTTATTAGATTATTTTCCGAATGATTATTTAATGGTGATAGACGAAAGCCACGTAACCATACCTCAAGTACACGC
AATGTACGGCGGCGACCGTAGTAGAAAAGAGAATTTGGTAGAATACGGGTTTAGGCTACCAGCCGCTATGGATAACAGAC
CTTTGAAGTTTGAGGAGTTTGAAAGTATGCAAAACCAAGTCATCTATGTATCTGCCACGCCAGCGGATTATGAATTGGAA
AAGACGCAAGGCGAATATGTGGAGCAGATTATCCGCCCAACAGGTTTGCTAGACCCGATTATAGAGGTAAGACCTACCCT
TAATCAGATAGATGATTTAATGGAGGAGATTCAAAAAAGAGCAGAGGAAGATGAGAGGGTTTTAGTAACCACACTCACAA
AGAAAATGGCAGAAGAACTCACTAAATATTTTACCAAATTTGGGATAAGAACCAGATACATTCATTCTGATGTAGATACA
TTGGAGCGCATACAGATAATGCAAGATTTGCGTGCAGGACTTTTTGATGTACTTGTGGGGGTTAATCTACTTAGAGAAGG
TTTAGATTTACCAGAGGTATCTTTGGTGGCTATCTTAGATGCAGATAAAGAGGGTATGCTTCGTTCTCGCCGTTCAATGA
TACAGACGGTAGGACGAGCGGCTAGAAACATCAATGGCAAAGCCATTATGTATGCAGATAAGATGACTAAATCTATGCAA
GCCACCATTGATGAAACCAACTATCGTAGAGAAAAACAAATGAGCTACAACGAGGCTAACGGTCTTATACCACAGCCTTT
AAATAAGAAAATATCCGATGTTTTGGTAGGGCATACACCTGATTTCCCGAAACAAGAATATATCCAAAAAGAAATTGTGA
AGCAGGTAGCTGAAACAAAGGTTAGCTATGGTAATGCAGAGGATTTGGAGAAAATAATAGCAGAGAAACAAAAACAAATG
GAGGTTGCCGCAAAACAATTAGACTTTATCTTAGCCGCAAAACTAAGAGATGAAATAAAGGCTCTAAAAGGAACACCGTA
A

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(430-542)

UvrB interaction domain (UvrB_inter)

(158-247)

Type III restriction enzyme, res subunit (ResIII)

(9-90)

UvrB/uvrC motif (UVR)

(630-663)

Ultra-violet resistance protein B (UvrB)

(550-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.842

99.85

0.568
  uvrB Streptococcus pneumoniae R6

56.692

99.85

0.566
  uvrB Streptococcus pneumoniae D39

56.692

99.85

0.566

Multiple sequence alignment