Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EFD52_RS10375 | Genome accession | NZ_CP033606 |
| Coordinates | 2116810..2117310 (-) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis strain IL6288 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2111810..2122310
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EFD52_RS10350 (EFD52_10350) | gnd | 2112881..2113786 (-) | 906 | WP_031297004.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| EFD52_RS10355 (EFD52_10355) | - | 2114150..2114998 (+) | 849 | WP_010906370.1 | MurR/RpiR family transcriptional regulator | - |
| EFD52_RS10360 (EFD52_10360) | - | 2115036..2115344 (+) | 309 | WP_010906371.1 | DUF960 domain-containing protein | - |
| EFD52_RS10365 (EFD52_10365) | - | 2115418..2116191 (-) | 774 | WP_003131951.1 | metallophosphoesterase | - |
| EFD52_RS10370 (EFD52_10370) | rpsR | 2116391..2116636 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| EFD52_RS10375 (EFD52_10375) | ssb | 2116810..2117310 (-) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| EFD52_RS10380 (EFD52_10380) | rpsF | 2117340..2117633 (-) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| EFD52_RS10385 (EFD52_10385) | - | 2117825..2118679 (-) | 855 | WP_010906372.1 | undecaprenyl-diphosphate phosphatase | - |
| EFD52_RS10390 (EFD52_10390) | - | 2119201..2120667 (+) | 1467 | WP_021214997.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=324348 EFD52_RS10375 WP_003131953.1 2116810..2117310(-) (ssb) [Lactococcus lactis strain IL6288]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=324348 EFD52_RS10375 WP_003131953.1 2116810..2117310(-) (ssb) [Lactococcus lactis strain IL6288]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |