Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EFI48_RS20505 Genome accession   NZ_CP033604
Coordinates   4457569..4459083 (+) Length   504 a.a.
NCBI ID   WP_123173999.1    Uniprot ID   A0AAN1URJ3
Organism   Aeromonas veronii strain MS-18-37     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4452569..4464083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFI48_RS20485 (EFI48_20485) - 4454291..4455235 (-) 945 WP_123173997.1 branched-chain amino acid transaminase -
  EFI48_RS20490 (EFI48_20490) ilvM 4455248..4455526 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  EFI48_RS20495 (EFI48_20495) ilvG 4455523..4457184 (-) 1662 WP_123173998.1 acetolactate synthase 2 catalytic subunit -
  EFI48_RS20505 (EFI48_20505) comM 4457569..4459083 (+) 1515 WP_123173999.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EFI48_RS20510 (EFI48_20510) - 4459210..4460109 (+) 900 WP_005339610.1 acyltransferase -
  EFI48_RS20515 (EFI48_20515) - 4460116..4461081 (+) 966 WP_123174000.1 acyltransferase -
  EFI48_RS20520 (EFI48_20520) - 4461006..4461512 (-) 507 WP_123174001.1 DUF523 domain-containing protein -
  EFI48_RS20525 (EFI48_20525) - 4461509..4462159 (-) 651 WP_005339607.1 NUDIX hydrolase -
  EFI48_RS20530 (EFI48_20530) - 4462234..4462869 (+) 636 WP_043823230.1 nicotinamidase -
  EFI48_RS20535 (EFI48_20535) pncB 4462871..4464049 (+) 1179 WP_005342020.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54596.42 Da        Isoelectric Point: 7.2611

>NTDB_id=324279 EFI48_RS20505 WP_123173999.1 4457569..4459083(+) (comM) [Aeromonas veronii strain MS-18-37]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQDAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPQLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSAQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=324279 EFI48_RS20505 WP_123173999.1 4457569..4459083(+) (comM) [Aeromonas veronii strain MS-18-37]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCTCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACCGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCCATCGGCATTCTCGCTGCTTCCAAGCAGATACCGGCAAAATATCTGCTCGATCACGAATTTTT
GGGGGAGTTAGCCCTGACCGGCGAAATTCGTCCCGTGCTCGGGGTACTGCCTGCCGTACTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCGCGAGAGAACGGCCCGGAAGCCTCTCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAACTG
CTGGCCGTCACCGCCTGGCTGGCCGGCCAGTACGAGCTGCCGCTGCCGGATCCCCAAGACGCGGAGAGCCTGCCCGATGT
GCCGGACCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCTGCTGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGTCTGCCCGGCATTCTGCCGCCGCTCAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTCACCCCGCGCGCCGGTCACTGGCACCACAGGCCATACCG
CACGCCGCACCACAGTGCCTCGGCAGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGCGAAATATCGTTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAATTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAACCACTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCTCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGATCTGACTGTGGAAGTGCCACAGCTACCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCTAGTCAGCAGATCCGCGATCGGGTACTGGCGGCGCGAGAGCGCATGCTGAGCCGTAATGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCAGCGCAAGATGCCGAATTTTTGGAGAACGCTATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGAGGGTATCTCGTACCATTGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATTGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGATTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Haemophilus influenzae Rd KW20

61.462

100

0.617
  comM Glaesserella parasuis strain SC1401

60.552

100

0.609
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.972

100

0.464

Multiple sequence alignment