Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ECB94_RS11525 | Genome accession | NZ_CP033577 |
| Coordinates | 2404331..2404882 (+) | Length | 183 a.a. |
| NCBI ID | WP_006070982.1 | Uniprot ID | A0A084T6G5 |
| Organism | Vibrio mediterranei strain 117-T6 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2399331..2409882
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECB94_RS11510 (ECB94_11530) | uvrA | 2399388..2402216 (-) | 2829 | WP_006070977.1 | excinuclease ABC subunit UvrA | - |
| ECB94_RS11515 (ECB94_11535) | galU | 2402375..2403244 (-) | 870 | WP_006070978.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| ECB94_RS11520 (ECB94_11540) | qstR | 2403420..2404070 (-) | 651 | WP_124940613.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| ECB94_RS11525 (ECB94_11545) | ssb | 2404331..2404882 (+) | 552 | WP_006070982.1 | single-stranded DNA-binding protein | Machinery gene |
| ECB94_RS11530 (ECB94_11550) | csrD | 2405145..2407136 (+) | 1992 | WP_006070984.1 | RNase E specificity factor CsrD | - |
| ECB94_RS11535 (ECB94_11555) | - | 2407149..2408657 (+) | 1509 | WP_124940614.1 | MSHA biogenesis protein MshI | - |
| ECB94_RS11540 (ECB94_11560) | gspM | 2408654..2409304 (+) | 651 | WP_124940615.1 | type II secretion system protein GspM | - |
| ECB94_RS11545 (ECB94_11565) | - | 2409297..2409623 (+) | 327 | WP_038229124.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20119.39 Da Isoelectric Point: 5.2358
>NTDB_id=324123 ECB94_RS11525 WP_006070982.1 2404331..2404882(+) (ssb) [Vibrio mediterranei strain 117-T6]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRQGGGAPMQGGMQGGMNQGGGMQQQAPQQQGWGQPQQPVQQPAQ
QKPAQQQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRQGGGAPMQGGMQGGMNQGGGMQQQAPQQQGWGQPQQPVQQPAQ
QKPAQQQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 552 bp
>NTDB_id=324123 ECB94_RS11525 WP_006070982.1 2404331..2404882(+) (ssb) [Vibrio mediterranei strain 117-T6]
ATGGCAAGCCGTGGAGTAAACAAAGTCATTCTAGTGGGTAACTTAGGTAACGACCCAGAAATTCGTTACATGCCAAACGG
CGGTGCCGTGGCGAATATTACAATCGCAACCTCTGAATCTTGGCGTGATAAAGCGACAGGCGAGCAGCGTGAAAAAACTG
AGTGGCACCGCGTTGCTCTGTTTGGCAAGCTAGCGGAAGTTGCTGGTGAATATCTGCGTAAGGGCTCTCAAGTTTATATT
GAAGGTCAACTGCAAACTCGTAAGTGGCAAGATCAAAGTGGTCAAGACCGCTACACAACGGAAGTTGTTGTTCAAGGCTT
CAACGGCGTGATGCAAATGCTAGGTGGCCGCCAAGGTGGTGGTGCTCCTATGCAGGGTGGTATGCAAGGCGGCATGAACC
AAGGTGGTGGCATGCAGCAGCAAGCTCCTCAACAACAGGGTTGGGGACAGCCTCAACAACCTGTACAACAACCAGCTCAG
CAAAAACCTGCTCAACAGCAGCCGCAGTACAATGAGCCACCAATGGACTTCGATGACGATATCCCGTTTTAA
ATGGCAAGCCGTGGAGTAAACAAAGTCATTCTAGTGGGTAACTTAGGTAACGACCCAGAAATTCGTTACATGCCAAACGG
CGGTGCCGTGGCGAATATTACAATCGCAACCTCTGAATCTTGGCGTGATAAAGCGACAGGCGAGCAGCGTGAAAAAACTG
AGTGGCACCGCGTTGCTCTGTTTGGCAAGCTAGCGGAAGTTGCTGGTGAATATCTGCGTAAGGGCTCTCAAGTTTATATT
GAAGGTCAACTGCAAACTCGTAAGTGGCAAGATCAAAGTGGTCAAGACCGCTACACAACGGAAGTTGTTGTTCAAGGCTT
CAACGGCGTGATGCAAATGCTAGGTGGCCGCCAAGGTGGTGGTGCTCCTATGCAGGGTGGTATGCAAGGCGGCATGAACC
AAGGTGGTGGCATGCAGCAGCAAGCTCCTCAACAACAGGGTTGGGGACAGCCTCAACAACCTGTACAACAACCAGCTCAG
CAAAAACCTGCTCAACAGCAGCCGCAGTACAATGAGCCACCAATGGACTTCGATGACGATATCCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
78.307 |
100 |
0.809 |
| ssb | Glaesserella parasuis strain SC1401 |
58.73 |
100 |
0.607 |
| ssb | Neisseria meningitidis MC58 |
42.857 |
100 |
0.459 |
| ssb | Neisseria gonorrhoeae MS11 |
42.857 |
100 |
0.459 |