Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | ECB94_RS11520 | Genome accession | NZ_CP033577 |
| Coordinates | 2403420..2404070 (-) | Length | 216 a.a. |
| NCBI ID | WP_124940613.1 | Uniprot ID | A0A3G4VAM8 |
| Organism | Vibrio mediterranei strain 117-T6 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2398420..2409070
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECB94_RS11510 (ECB94_11530) | uvrA | 2399388..2402216 (-) | 2829 | WP_006070977.1 | excinuclease ABC subunit UvrA | - |
| ECB94_RS11515 (ECB94_11535) | galU | 2402375..2403244 (-) | 870 | WP_006070978.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| ECB94_RS11520 (ECB94_11540) | qstR | 2403420..2404070 (-) | 651 | WP_124940613.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| ECB94_RS11525 (ECB94_11545) | ssb | 2404331..2404882 (+) | 552 | WP_006070982.1 | single-stranded DNA-binding protein | Machinery gene |
| ECB94_RS11530 (ECB94_11550) | csrD | 2405145..2407136 (+) | 1992 | WP_006070984.1 | RNase E specificity factor CsrD | - |
| ECB94_RS11535 (ECB94_11555) | - | 2407149..2408657 (+) | 1509 | WP_124940614.1 | MSHA biogenesis protein MshI | - |
Sequence
Protein
Download Length: 216 a.a. Molecular weight: 24808.41 Da Isoelectric Point: 9.3113
>NTDB_id=324122 ECB94_RS11520 WP_124940613.1 2403420..2404070(-) (qstR) [Vibrio mediterranei strain 117-T6]
MRRNNYQRVIQHVTLNQEDSVTKRVKRLSHLSINAIEAITPQDLLSTTSGSRNRILLFDYEESLDLFQQVLNLPLASKNF
ETVLINVPHRLTTEEILRYGHIKGLFYSHEDAKKIVIGLGEIINGKNWLPREVTSQLLHHYRHVVSANTSPTVVDLTARE
IEILWCLQSGASNLQISEDLFITESTVKSHLYQVFRKLSVKNRLQAIAWANQNLLS
MRRNNYQRVIQHVTLNQEDSVTKRVKRLSHLSINAIEAITPQDLLSTTSGSRNRILLFDYEESLDLFQQVLNLPLASKNF
ETVLINVPHRLTTEEILRYGHIKGLFYSHEDAKKIVIGLGEIINGKNWLPREVTSQLLHHYRHVVSANTSPTVVDLTARE
IEILWCLQSGASNLQISEDLFITESTVKSHLYQVFRKLSVKNRLQAIAWANQNLLS
Nucleotide
Download Length: 651 bp
>NTDB_id=324122 ECB94_RS11520 WP_124940613.1 2403420..2404070(-) (qstR) [Vibrio mediterranei strain 117-T6]
ATGAGAAGAAATAATTACCAACGCGTCATTCAACATGTCACTCTTAATCAAGAGGACTCAGTTACCAAAAGGGTAAAGCG
CTTATCCCATCTAAGTATTAATGCTATTGAAGCCATCACTCCTCAGGATCTACTTTCAACCACCTCCGGTTCTCGTAATC
GTATTTTGCTCTTTGATTACGAAGAATCCTTAGATCTTTTCCAACAAGTGTTAAACCTGCCTTTAGCAAGCAAAAATTTT
GAGACCGTACTGATCAATGTTCCGCATCGGCTAACGACCGAGGAGATCCTTAGATATGGTCATATCAAAGGGCTCTTTTA
CAGCCACGAAGACGCTAAGAAAATCGTGATTGGTTTAGGAGAAATCATTAACGGCAAAAACTGGCTACCTCGAGAGGTAA
CCAGCCAACTGTTACATCACTATCGCCATGTGGTCTCAGCAAACACCTCTCCCACTGTGGTGGATTTGACAGCCAGAGAA
ATCGAGATTCTGTGGTGTCTGCAATCGGGAGCCAGCAACTTACAAATATCTGAAGACCTATTTATTACTGAATCCACAGT
AAAATCCCATCTTTATCAGGTGTTTAGAAAACTTTCGGTAAAAAACCGCCTACAAGCGATAGCTTGGGCTAATCAAAACC
TTCTCTCCTAA
ATGAGAAGAAATAATTACCAACGCGTCATTCAACATGTCACTCTTAATCAAGAGGACTCAGTTACCAAAAGGGTAAAGCG
CTTATCCCATCTAAGTATTAATGCTATTGAAGCCATCACTCCTCAGGATCTACTTTCAACCACCTCCGGTTCTCGTAATC
GTATTTTGCTCTTTGATTACGAAGAATCCTTAGATCTTTTCCAACAAGTGTTAAACCTGCCTTTAGCAAGCAAAAATTTT
GAGACCGTACTGATCAATGTTCCGCATCGGCTAACGACCGAGGAGATCCTTAGATATGGTCATATCAAAGGGCTCTTTTA
CAGCCACGAAGACGCTAAGAAAATCGTGATTGGTTTAGGAGAAATCATTAACGGCAAAAACTGGCTACCTCGAGAGGTAA
CCAGCCAACTGTTACATCACTATCGCCATGTGGTCTCAGCAAACACCTCTCCCACTGTGGTGGATTTGACAGCCAGAGAA
ATCGAGATTCTGTGGTGTCTGCAATCGGGAGCCAGCAACTTACAAATATCTGAAGACCTATTTATTACTGAATCCACAGT
AAAATCCCATCTTTATCAGGTGTTTAGAAAACTTTCGGTAAAAAACCGCCTACAAGCGATAGCTTGGGCTAATCAAAACC
TTCTCTCCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio cholerae strain A1552 |
52.294 |
100 |
0.528 |
| qstR | Vibrio campbellii strain DS40M4 |
52.315 |
100 |
0.523 |
| qstR | Vibrio parahaemolyticus RIMD 2210633 |
51.852 |
100 |
0.519 |