Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EEA47_RS07275 Genome accession   NZ_CP033457
Coordinates   1524386..1524931 (-) Length   181 a.a.
NCBI ID   WP_054579428.1    Uniprot ID   A0AAW6ZQA2
Organism   Vibrio alginolyticus strain SNU_SP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1519386..1529931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEA47_RS07255 (EEA47_07510) - 1519705..1520037 (-) 333 WP_005381196.1 hypothetical protein -
  EEA47_RS07260 (EEA47_07515) gspM 1520030..1520680 (-) 651 WP_238843025.1 type II secretion system protein GspM -
  EEA47_RS07265 (EEA47_07520) - 1520677..1522122 (-) 1446 WP_054579427.1 hypothetical protein -
  EEA47_RS07270 (EEA47_07525) csrD 1522134..1524143 (-) 2010 WP_191116183.1 RNase E specificity factor CsrD -
  EEA47_RS07275 (EEA47_07530) ssb 1524386..1524931 (-) 546 WP_054579428.1 single-stranded DNA-binding protein Machinery gene
  EEA47_RS07280 (EEA47_07535) qstR 1525209..1525853 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  EEA47_RS07285 (EEA47_07540) galU 1526013..1526885 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EEA47_RS07290 (EEA47_07545) uvrA 1527035..1529857 (+) 2823 WP_033907424.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20149.19 Da        Isoelectric Point: 4.9164

>NTDB_id=323802 EEA47_RS07275 WP_054579428.1 1524386..1524931(-) (ssb) [Vibrio alginolyticus strain SNU_SP1]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQQPQQQA
PQQSQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=323802 EEA47_RS07275 WP_054579428.1 1524386..1524931(-) (ssb) [Vibrio alginolyticus strain SNU_SP1]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTATTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACAGCAACCACAACAACAGGCT
CCGCAGCAATCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.459

100

0.812
  ssb Glaesserella parasuis strain SC1401

55.851

100

0.58
  ssb Neisseria meningitidis MC58

44.92

100

0.464
  ssb Neisseria gonorrhoeae MS11

44.92

100

0.464

Multiple sequence alignment