Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   FHI56_RS02810 Genome accession   NZ_CP040804
Coordinates   329801..330544 (+) Length   247 a.a.
NCBI ID   WP_002886967.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LAB813     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 324801..335544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS02790 (FHI56_02790) - 324900..326207 (+) 1308 WP_002885760.1 GHKL domain-containing protein -
  FHI56_RS02795 (FHI56_02795) - 326267..327157 (+) 891 WP_149561142.1 histidine kinase -
  FHI56_RS02800 (FHI56_02800) - 327179..328459 (+) 1281 WP_049529279.1 hypothetical protein -
  FHI56_RS02805 (FHI56_02805) - 328483..329799 (+) 1317 WP_049529280.1 GHKL domain-containing protein -
  FHI56_RS02810 (FHI56_02810) comE/blpR 329801..330544 (+) 744 WP_002886967.1 LytTR family DNA-binding domain-containing protein Regulator
  FHI56_RS02815 (FHI56_02815) - 330696..331658 (+) 963 WP_262407711.1 IS30 family transposase -
  FHI56_RS02820 (FHI56_02820) - 332569..333768 (+) 1200 WP_070579355.1 argininosuccinate synthase -
  FHI56_RS02825 (FHI56_02825) argH 334095..335480 (+) 1386 WP_041817286.1 argininosuccinate lyase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28533.89 Da        Isoelectric Point: 7.0533

>NTDB_id=323542 FHI56_RS02810 WP_002886967.1 329801..330544(+) (comE/blpR) [Streptococcus salivarius strain LAB813]
MNIYILEDDLMQQTRISDIIRELVSEGAFSVRKLEVFSKPHKLLSSINEKGNHQIFLLDIDIDGNRKKGLEVASEIRQQD
ANAVIIFVTTHSEFAPISFKYKVSALDFIEKTVSNVEFKQQLKQTLTFVNQKIGDVDDDEMFVFETAQSRIQVPMRDIYY
FATAATPHKVMLITKTERLEFYANLGDITSVNKILFSCHRSFLVNLDNIARIDKTQLMIYFENGDSCPVSRLKMKALLKK
WSEVRNH

Nucleotide


Download         Length: 744 bp        

>NTDB_id=323542 FHI56_RS02810 WP_002886967.1 329801..330544(+) (comE/blpR) [Streptococcus salivarius strain LAB813]
ATGAATATATATATTTTAGAAGATGATTTGATGCAACAAACACGTATTAGTGATATCATCAGAGAATTGGTTTCAGAGGG
TGCGTTTTCTGTACGAAAACTTGAAGTTTTTTCTAAACCACATAAACTATTGTCCAGCATCAATGAGAAGGGGAACCATC
AGATTTTTCTTTTGGATATTGATATTGATGGCAATCGAAAGAAGGGGTTAGAAGTTGCCTCTGAAATTCGTCAACAAGAT
GCTAATGCGGTTATTATTTTTGTAACAACTCACTCAGAATTTGCTCCAATTAGTTTTAAGTATAAGGTTTCCGCACTTGA
TTTTATTGAAAAGACAGTCTCTAATGTGGAATTCAAACAACAATTGAAACAAACCTTGACTTTTGTAAATCAAAAAATTG
GAGATGTGGACGATGATGAGATGTTTGTGTTTGAAACTGCTCAGTCTAGAATACAAGTTCCGATGCGAGATATTTATTAT
TTTGCGACAGCTGCAACTCCTCATAAGGTAATGTTAATTACTAAAACAGAGCGCCTGGAGTTTTATGCTAATCTTGGAGA
TATTACTTCGGTGAATAAAATACTCTTTTCATGTCACCGCTCCTTTTTAGTTAATCTGGATAATATTGCCCGTATTGATA
AGACGCAACTGATGATTTATTTTGAGAATGGTGATTCATGTCCGGTTTCTCGCTTGAAAATGAAGGCCCTACTTAAAAAA
TGGTCAGAGGTAAGAAATCATTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-122)

LytTr DNA-binding domain (LytTR)

(151-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

47.083

97.166

0.457
  comE/comE2 Streptococcus equinus JB1

41.633

99.19

0.413
  comE/comE1 Streptococcus equinus JB1

39.669

97.976

0.389
  comE/comE2 Streptococcus gordonii strain NCTC7865

36.929

97.571

0.36
  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

36.929

97.571

0.36