Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JL719_RS01580 Genome accession   NZ_CP033381
Coordinates   367601..369109 (+) Length   502 a.a.
NCBI ID   WP_033158176.1    Uniprot ID   -
Organism   Methylomonas sp. LW13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 362601..374109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL719_RS01560 (U737_01605) - 363344..365083 (+) 1740 WP_084153384.1 alpha/beta fold hydrolase -
  JL719_RS01565 (U737_01610) - 365095..366669 (+) 1575 WP_051670262.1 hypothetical protein -
  JL719_RS01570 (U737_01615) - 366753..367337 (+) 585 WP_033158178.1 MarR family winged helix-turn-helix transcriptional regulator -
  JL719_RS01575 (U737_01620) ubiK 367343..367594 (+) 252 WP_033158177.1 ubiquinone biosynthesis accessory factor UbiK -
  JL719_RS01580 (U737_01625) comM 367601..369109 (+) 1509 WP_033158176.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JL719_RS01585 (U737_01630) - 369129..369326 (-) 198 WP_174843444.1 hypothetical protein -
  JL719_RS01590 (U737_01635) - 369570..370172 (-) 603 WP_033158174.1 peroxiredoxin -
  JL719_RS01595 (U737_01640) - 370424..370936 (+) 513 WP_020484362.1 hypothetical protein -
  JL719_RS01600 (U737_01645) nadC 370953..371780 (-) 828 WP_033158173.1 carboxylating nicotinate-nucleotide diphosphorylase -
  JL719_RS01605 (U737_01650) ampD 371932..372519 (+) 588 WP_033158308.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54142.23 Da        Isoelectric Point: 7.9313

>NTDB_id=323455 JL719_RS01580 WP_033158176.1 367601..369109(+) (comM) [Methylomonas sp. LW13]
MSLAVVYSRGRSGIDAPQVTVEVHVSSGLPALNIVGLPETAVKESKDRVRGAIINSHFEFPFQRITINLAPADLPKEGGR
FDLAIALGILAASGQIPKDALHEYECIGELSLGGELRPIPGALPVAIHCRNAFRQLILPAGCAAEASLIKDAQLLPARTL
LEVCAHLAGRQAIAPPDVHLSFEQAVHTVDFADVHGQFHVKRAMEIAAAGKHNLLMLGPPGTGKSMLAARLPTILPELSE
QQAQETAALASISDHGLDVSRWRQPPYRAPHHTASAAALVGGGSNPKPGEISLSHNGALFLDELPEFDRKVLEVLREPLE
TGHITISRANRQADFPATFQLIAAMNPCPCGYLGDASGRCRCTAEQVARYRARVSGPLLDRIDMHMEVPRVALEVLRKGS
AAGEETSEAIRQRVVVARDIAYRRQGKANAALTAAEVKVICTLSEAGHQLLEQALEKFGLSHRAYHRILKLARTIADLAN
SKNIEISHLSEAIGYRKLDRTR

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=323455 JL719_RS01580 WP_033158176.1 367601..369109(+) (comM) [Methylomonas sp. LW13]
ATGTCGCTGGCCGTCGTTTACAGCCGGGGCCGCTCCGGCATTGACGCCCCGCAAGTGACGGTGGAAGTGCATGTCAGTAG
CGGCCTACCGGCTTTAAATATCGTCGGCTTGCCCGAGACGGCGGTGAAGGAAAGCAAGGATAGGGTGCGCGGGGCGATCA
TTAATTCGCACTTCGAATTTCCGTTCCAGCGCATTACCATCAATCTGGCCCCCGCCGACCTGCCCAAGGAGGGCGGCCGC
TTTGATTTGGCGATTGCATTAGGTATCCTGGCAGCCTCCGGGCAAATCCCCAAGGATGCCTTGCACGAGTACGAATGCAT
CGGCGAGTTATCGCTAGGCGGTGAGTTGCGGCCGATTCCCGGCGCGTTGCCGGTAGCGATTCATTGCCGCAATGCTTTTC
GGCAACTGATTCTGCCTGCTGGTTGCGCGGCGGAGGCGTCGTTAATCAAGGATGCGCAACTCCTGCCGGCCAGGACACTA
TTGGAAGTCTGTGCCCACTTGGCCGGCCGGCAAGCCATCGCGCCACCTGACGTTCATCTCAGCTTCGAGCAAGCGGTTCA
CACGGTCGATTTTGCCGACGTGCACGGCCAATTTCACGTCAAACGGGCTATGGAAATCGCCGCCGCCGGGAAACACAATT
TATTGATGCTGGGCCCGCCCGGCACCGGCAAGTCGATGCTGGCGGCGCGCTTGCCTACCATTCTGCCGGAACTCAGCGAA
CAGCAAGCCCAGGAAACCGCCGCGTTGGCCTCGATCAGCGACCACGGCCTGGACGTCAGTCGCTGGCGGCAGCCACCTTA
CAGAGCGCCGCACCATACCGCATCAGCTGCGGCTTTGGTTGGCGGCGGCAGCAACCCAAAACCCGGCGAAATATCCTTGT
CGCACAACGGCGCGTTGTTTTTGGATGAGTTGCCGGAATTCGATAGAAAAGTCCTGGAAGTGCTGCGCGAGCCCTTGGAA
ACCGGGCATATCACGATTTCCCGCGCCAACCGCCAAGCCGACTTTCCGGCCACTTTTCAGTTGATTGCAGCGATGAATCC
CTGTCCCTGTGGCTACCTGGGCGACGCCTCCGGCCGTTGCCGCTGCACCGCCGAACAAGTTGCCCGCTATCGCGCTCGAG
TCTCCGGGCCTCTTCTGGACAGAATAGATATGCATATGGAAGTGCCGCGCGTCGCCCTGGAGGTATTGCGCAAGGGCTCT
GCGGCCGGTGAAGAAACCAGCGAAGCGATTCGGCAGCGCGTCGTCGTAGCCCGCGACATTGCTTACCGCCGCCAAGGCAA
AGCCAATGCTGCGTTAACCGCCGCCGAGGTGAAGGTTATTTGTACTTTGTCCGAAGCCGGTCATCAGTTGCTGGAACAAG
CGCTGGAAAAATTCGGCCTGTCGCACCGGGCTTACCACCGAATATTGAAACTGGCGCGCACGATTGCCGATCTGGCGAAT
TCAAAGAATATCGAAATCTCCCACCTCAGCGAAGCCATAGGCTACCGCAAGCTTGATAGAACCCGATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.6

99.602

0.544
  comM Glaesserella parasuis strain SC1401

53.861

100

0.542
  comM Vibrio campbellii strain DS40M4

53.8

99.602

0.536
  comM Haemophilus influenzae Rd KW20

51.976

100

0.524
  comM Legionella pneumophila str. Paris

51.697

99.801

0.516
  comM Legionella pneumophila strain ERS1305867

51.697

99.801

0.516
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.771

100

0.476

Multiple sequence alignment