Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   FGE23_RS18115 Genome accession   NZ_CP040672
Coordinates   3652811..3653506 (-) Length   231 a.a.
NCBI ID   WP_007408165.1    Uniprot ID   A7Z793
Organism   Bacillus amyloliquefaciens strain X030     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3647811..3658506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS18085 - 3647826..3648629 (-) 804 WP_007408168.1 M23 family metallopeptidase -
  FGE23_RS18090 minD 3648757..3649560 (-) 804 WP_060674730.1 septum site-determining protein MinD -
  FGE23_RS18095 minC 3649563..3650243 (-) 681 WP_003152653.1 septum site-determining protein MinC -
  FGE23_RS18100 mreD 3650297..3650815 (-) 519 WP_003152650.1 rod shape-determining protein MreD -
  FGE23_RS18105 mreC 3650812..3651675 (-) 864 WP_146277257.1 rod shape-determining protein MreC -
  FGE23_RS18110 mreB 3651706..3652719 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  FGE23_RS18115 ysxA/radC 3652811..3653506 (-) 696 WP_007408165.1 DNA repair protein RadC Machinery gene
  FGE23_RS18120 - 3653538..3654107 (-) 570 WP_070082167.1 nucleoside triphosphate pyrophosphatase -
  FGE23_RS18125 - 3654248..3655249 (-) 1002 WP_146277259.1 SPOR domain-containing protein -
  FGE23_RS18130 comC 3655376..3656128 (-) 753 WP_070082169.1 A24 family peptidase Machinery gene
  FGE23_RS18135 - 3656268..3657560 (-) 1293 WP_077722653.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26080.30 Da        Isoelectric Point: 9.1909

>NTDB_id=323138 FGE23_RS18115 WP_007408165.1 3652811..3653506(-) (ysxA/radC) [Bacillus amyloliquefaciens strain X030]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=323138 FGE23_RS18115 WP_007408165.1 3652811..3653506(-) (ysxA/radC) [Bacillus amyloliquefaciens strain X030]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTCCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGCCTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGCACGGTGAAAGCTGTTCAGATCCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCATAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z793

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.879

100

0.879
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429