Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VS_RS14695 Genome accession   NC_011753
Coordinates   3275469..3276992 (-) Length   507 a.a.
NCBI ID   WP_012605097.1    Uniprot ID   -
Organism   Vibrio atlanticus     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3270469..3281992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS14670 (VS_3136) - 3270526..3270789 (+) 264 WP_009848104.1 YihD family protein -
  VS_RS14675 (VS_3138) ccoG 3271116..3272534 (+) 1419 WP_012605094.1 cytochrome c oxidase accessory protein CcoG -
  VS_RS14680 (VS_3139) - 3272609..3273595 (+) 987 WP_009848107.1 serine/threonine protein kinase -
  VS_RS14685 (VS_3140) - 3273649..3274248 (+) 600 WP_012605095.1 thiol:disulfide interchange protein DsbA/DsbL -
  VS_RS14690 (VS_3141) - 3274388..3275341 (+) 954 WP_012605096.1 DUF2860 domain-containing protein -
  VS_RS14695 (VS_3142) comM 3275469..3276992 (-) 1524 WP_012605097.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VS_RS14700 (VS_3143) ilvG 3277464..3279110 (+) 1647 WP_012605098.1 acetolactate synthase 2 catalytic subunit -
  VS_RS14705 (VS_3144) ilvM 3279112..3279396 (+) 285 WP_009848112.1 acetolactate synthase 2 small subunit -
  VS_RS14710 (VS_3145) - 3279409..3280362 (+) 954 WP_012605099.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55588.69 Da        Isoelectric Point: 7.6532

>NTDB_id=32305 VS_RS14695 WP_012605097.1 3275469..3276992(-) (comM) [Vibrio atlanticus]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIVQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEHHHVDVSDNRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGVLAEGGDR
GETTQVVKQRVKQARQLMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=32305 VS_RS14695 WP_012605097.1 3275469..3276992(-) (comM) [Vibrio atlanticus]
ATGGGACTCGCAATAATTCATAGCCGAGCTAGTGTGGGTGTAGAGGCACCAGAAGTGACTGTGGAAGTGCATATTAGCAA
CGGAATGCCCGGTTTTACGCTGGTGGGTCTACCTGAAACGACGGTTAAGGAATCTAAAGATCGAGTAAGGAGTGCCATCA
TCAATTCTCGCTTTGAATTTCCATCGAAAAGAATCACGGTCAACCTTGCACCTGCAGATTTACCCAAAGAGGGAGGACGT
TTCGATCTGCCAATTGCGCTTGGGATTTTGGTGGCGTCAGATCAGCTTCCTACATCAAAAATAGTTCAACATGAATTTAT
CGGTGAGTTGGCGTTATCGGGAGAGCTGCGTTCAGTCAAAGGAGTGCTACCAGCAACATTAGCGGCGGATAGTGTTGAGC
GATGCTTGGTGGTTCCGCACCATAACGGTGATCAGGCGGCCTTAGTTGGCAAGGGAGCGCATAAATCTGCACAAACCTTG
TTGGAGGTTTGCGCTGATATGTGTGGCCAGGCTCAGCTTGGTTTATATCGAACCGAGCATCATCATGTCGATGTGTCTGA
TAATCGTGACCTACAAGATATTATTGGCCAGCAACAAGGTAAGCGAGCACTGGAGATCGCCGCAGCGGGCAACCATAACC
TTCTTTTTCTCGGCCCGCCCGGAACTGGAAAAACCATGTTGGCGTCTCGATTGCGCGATTTGTTACCTGAGATGAGTGAC
GACGAGGCGATGGAAACCGCTTCGGTGGCTTCTTTAACGCAACAAGAAATCAATCAATACAACTGGAAACAACGACCTTT
CCGTTCTCCACACCATTCGAGTTCGATGGCAGCATTGGTCGGTGGTGGCTCGATACCTCGCCCCGGTGAGATCTCTTTAG
CACATAATGGCTTATTGTTTCTTGATGAGATGCCAGAGTTTGAGCGTAAGGTACTTGATTCACTACGAGAGCCACTAGAG
TCAGGTGAGATCATTATTTCACGCGTGGCAGGCAAGACACGTTTCCCAGCTCGCTTTCAATTAGTTGGTGCACTTAACCC
AAGCCCAACAGGTTATTATGAGGGCAATCAAGCTCGAGCGAACCCGCAAATTATCCTGCGTTACCTCAATCGACTATCCG
GGCCGTTATTGGATCGATTTGATATGTCGTTAGAGATCCCTCTATTGCCCAAAGGGGTGTTAGCCGAAGGAGGTGACCGT
GGTGAAACCACTCAAGTCGTGAAGCAACGAGTTAAACAAGCGCGTCAGTTGATGTTATCTCGAAACCATAAGTCGAACGC
ACTGTTAGGTAGCCGAGAAATTGAAAAGTACTGCCCATTGAGGCGTGAGGATGCAGAATTTCTGGAAACGGCTCTGCATC
GATTAGGTTTATCAATTCGTGCTTATCATCGCATTATTAAGGTAGCGCGAACCATTGCAGACCTAGACGGTAACGAACAG
ATTGAAAAGAAGCATTTATCGGAAGCGCTTGGTTACCGAGCGATGGATCGATTGTTGAAGCAACTTACGGCTCAAGCGGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.629

100

0.836
  comM Vibrio campbellii strain DS40M4

83.235

100

0.832
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

63.086

100

0.637
  comM Legionella pneumophila str. Paris

48.387

97.83

0.473
  comM Legionella pneumophila strain ERS1305867

48.387

97.83

0.473
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.292

99.803

0.422

Multiple sequence alignment