Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   SMI_RS06030 Genome accession   NC_013853
Coordinates   1182985..1183665 (-) Length   226 a.a.
NCBI ID   WP_000286917.1    Uniprot ID   -
Organism   Streptococcus mitis B6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1177985..1188665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS05995 (smi_1183) - 1178216..1178785 (+) 570 WP_000681283.1 CYTH domain-containing protein -
  SMI_RS06000 (smi_1184) - 1178898..1179857 (+) 960 WP_001280886.1 ribose-phosphate diphosphokinase -
  SMI_RS06005 (smi_1185) - 1179867..1180982 (+) 1116 WP_000639654.1 cysteine desulfurase family protein -
  SMI_RS06010 (smi_1186) - 1180987..1181334 (+) 348 WP_000863538.1 DUF1831 domain-containing protein -
  SMI_RS06015 (smi_1187) - 1181342..1181557 (+) 216 WP_000475612.1 DUF4649 family protein -
  SMI_RS06020 (smi_1188) - 1181640..1182281 (+) 642 WP_000653421.1 redox-sensing transcriptional repressor Rex -
  SMI_RS06025 (smi_1189) - 1182299..1182988 (+) 690 WP_000743346.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  SMI_RS06030 (smi_1190) radC 1182985..1183665 (-) 681 WP_000286917.1 RadC family protein Machinery gene
  SMI_RS06035 (smi_1191) pcrA 1183708..1185999 (-) 2292 WP_000992872.1 DNA helicase PcrA -
  SMI_RS06040 (smi_1192) - 1186183..1187853 (-) 1671 WP_000845298.1 formate--tetrahydrofolate ligase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25570.59 Da        Isoelectric Point: 7.6982

>NTDB_id=32305 SMI_RS06030 WP_000286917.1 1182985..1183665(-) (radC) [Streptococcus mitis B6]
MYSISFQEDSLLPRERLAKEGVEALSNQELLAILLRTGTRQANVFEIAQKVLNNLSSLTDLKKMTLQELQSLSGIGRVKA
IELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGHKKQEHLVALYLNTQNQIIHQQTIFIGSATRSIAEPREILH
YAIKHMATSLILVHNHPSGAVAPSRNDDHVTKLVKEACDLMGIVLLDHLIVSHSNYFSYREKTDLI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=32305 SMI_RS06030 WP_000286917.1 1182985..1183665(-) (radC) [Streptococcus mitis B6]
ATGTATAGTATTTCATTTCAAGAAGATTCACTGTTGCCAAGAGAAAGGCTGGCCAAGGAAGGAGTTGAAGCGCTCAGTAA
TCAAGAGTTGCTAGCTATTTTACTCAGGACAGGAACACGGCAAGCTAATGTTTTTGAAATTGCCCAGAAAGTTTTGAACA
ACCTTTCAAGTCTAACGGATTTGAAAAAAATGACCCTGCAGGAATTGCAGAGCCTATCTGGTATAGGGCGAGTCAAGGCT
ATAGAATTGCAAGCTATGATTGAACTGGGGCATCGTATTCATAAACATGAGACCCTTGAGATGGAAAGTATTCTCAGCAG
TCAAAAGTTGGCCAAGAAGATGCAGCAGGAGTTGGGACATAAAAAACAAGAGCACCTAGTGGCGCTCTATCTCAATACTC
AAAATCAAATCATCCATCAACAGACCATTTTTATCGGTTCTGCCACTCGCAGTATTGCTGAACCGCGAGAGATTCTTCAC
TATGCCATCAAGCATATGGCGACCTCTCTTATCTTGGTTCACAATCATCCTTCAGGAGCGGTAGCCCCTAGCCGAAATGA
TGATCATGTTACTAAACTTGTCAAAGAAGCCTGCGACCTGATGGGGATTGTCCTCTTGGACCATTTGATTGTCTCTCATT
CTAATTACTTTAGTTATCGTGAAAAGACGGATTTAATCTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-81)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

97.788

100

0.978
  radC Streptococcus pneumoniae R6

97.345

100

0.973
  radC Streptococcus pneumoniae D39

97.345

100

0.973
  radC Streptococcus gordonii str. Challis substr. CH1

76.991

100

0.77
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

48.095

92.92

0.447

Multiple sequence alignment