Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   FGE23_RS00300 Genome accession   NZ_CP040672
Coordinates   56922..57797 (-) Length   291 a.a.
NCBI ID   WP_146277410.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 51922..62797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS00265 - 52118..52594 (+) 477 WP_070082285.1 Na+/H+ antiporter subunit E -
  FGE23_RS00270 - 52594..52878 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  FGE23_RS00275 mnhG 52862..53236 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  FGE23_RS00280 - 53276..53659 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  FGE23_RS00285 comA 53681..54325 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  FGE23_RS00290 comP 54406..56712 (-) 2307 WP_146275405.1 sensor histidine kinase Regulator
  FGE23_RS00295 comX 56731..56907 (-) 177 WP_044052947.1 competence pheromone ComX -
  FGE23_RS00300 comQ 56922..57797 (-) 876 WP_146277410.1 polyprenyl synthetase family protein Regulator
  FGE23_RS00305 degQ 57949..58089 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  FGE23_RS00315 - 58554..58895 (+) 342 WP_014305721.1 hypothetical protein -
  FGE23_RS00320 - 58902..60122 (-) 1221 WP_003152038.1 EAL and HDOD domain-containing protein -
  FGE23_RS00325 - 60252..61718 (-) 1467 WP_014305722.1 nicotinate phosphoribosyltransferase -
  FGE23_RS00330 - 61736..62287 (-) 552 WP_146275407.1 cysteine hydrolase family protein -
  FGE23_RS00335 - 62384..62782 (-) 399 WP_003152031.1 YueI family protein -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33371.16 Da        Isoelectric Point: 4.4978

>NTDB_id=323003 FGE23_RS00300 WP_146277410.1 56922..57797(-) (comQ) [Bacillus amyloliquefaciens strain X030]
MCLDAETIKEKMKEIVGEKINNPHLKDTLQTFINEKNHFAFGVLAFKHYVAFDGEHYSDITLLASGIELLILAFDIFDDI
EDEDNLDKEWMKIDQSISLNAATSLYSISLQVICELKTNSDFPRLAMKYALNAMQGQHNDLENFPETEDECLQMIKQKSG
SLTAMSAVLGTMLANGEFNEEIENYSYKIGIVKQIENDYYGLFNKNRSDIRKGRKTLILLYLKRRFNAASEKILDLMNAE
ASYHSFLIDNKKSLEDLLFDAGVSQYVSMLIKMYEEEITTSIKDLNIMLEL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=323003 FGE23_RS00300 WP_146277410.1 56922..57797(-) (comQ) [Bacillus amyloliquefaciens strain X030]
ATGTGTTTAGATGCCGAAACGATTAAAGAGAAGATGAAGGAAATTGTTGGGGAGAAAATAAATAATCCACATTTAAAAGA
CACCCTTCAGACTTTTATAAATGAAAAAAATCATTTTGCTTTTGGTGTTCTTGCATTTAAGCATTATGTGGCTTTCGATG
GTGAGCATTATTCGGATATTACGTTATTGGCTTCAGGAATTGAATTGTTAATTTTAGCTTTTGATATTTTTGACGATATA
GAGGATGAAGATAACTTGGATAAGGAATGGATGAAGATAGATCAATCTATCTCTTTAAATGCAGCCACTTCTCTTTATTC
AATAAGTCTTCAAGTGATTTGTGAGCTTAAAACGAACTCCGATTTTCCCCGGCTTGCTATGAAATATGCTTTAAATGCAA
TGCAAGGTCAGCATAATGACCTCGAAAATTTCCCCGAAACTGAAGACGAATGTCTTCAAATGATTAAACAAAAATCAGGC
TCGCTTACTGCAATGTCAGCTGTATTAGGAACAATGCTTGCAAATGGGGAGTTTAACGAAGAAATTGAGAATTATTCTTA
TAAAATTGGAATTGTTAAACAGATTGAAAATGATTATTATGGTCTTTTTAATAAAAATCGTAGTGATATCAGAAAGGGAA
GAAAAACATTAATTCTGTTGTATCTAAAGCGAAGATTTAATGCTGCTTCAGAAAAAATCTTGGATTTAATGAATGCAGAA
GCAAGTTACCATTCATTCCTCATTGATAATAAAAAAAGCCTTGAAGACCTGCTATTTGATGCAGGAGTTAGCCAGTATGT
TTCAATGTTAATTAAAATGTACGAGGAAGAAATTACGACAAGTATAAAAGATTTAAATATAATGTTAGAACTTTAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(43-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

47.826

94.845

0.454

Multiple sequence alignment