Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   VS_RS13520 Genome accession   NC_011753
Coordinates   3023756..3024370 (-) Length   204 a.a.
NCBI ID   WP_041472934.1    Uniprot ID   -
Organism   Vibrio atlanticus     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3018756..3029370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS13495 (VS_2871) aroB 3019067..3020155 (-) 1089 WP_012604944.1 3-dehydroquinate synthase -
  VS_RS13500 (VS_2872) aroK 3020180..3020698 (-) 519 WP_009848907.1 shikimate kinase AroK -
  VS_RS13505 (VS_2873) pilQ 3020875..3022593 (-) 1719 WP_012604945.1 type IV pilus secretin PilQ Machinery gene
  VS_RS13510 (VS_2874) pilP 3022629..3023147 (-) 519 WP_041472933.1 pilus assembly protein PilP Machinery gene
  VS_RS13515 (VS_2875) pilO 3023134..3023763 (-) 630 WP_012604947.1 type 4a pilus biogenesis protein PilO Machinery gene
  VS_RS13520 (VS_2876) pilN 3023756..3024370 (-) 615 WP_041472934.1 PilN domain-containing protein Machinery gene
  VS_RS13525 (VS_2877) pilM 3024354..3025379 (-) 1026 WP_041472935.1 type IV pilus assembly protein PilM Machinery gene
  VS_RS13530 (VS_2878) - 3025531..3028089 (+) 2559 WP_012604950.1 penicillin-binding protein 1A -
  VS_RS13535 (VS_2879) oxyR 3028202..3029095 (-) 894 WP_012604951.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23467.95 Da        Isoelectric Point: 9.8945

>NTDB_id=32300 VS_RS13520 WP_041472934.1 3023756..3024370(-) (pilN) [Vibrio atlanticus]
MLHQINLLPWRDEIRAQHKKRFIHLVILGVIIALTGQWAVGHYFQGQQAKQQARLNYLNQYIAELDRQIQSLKVAEQEHK
AILTRLDVVESLQLGRNKTTDFMNLMPELIPEGVYVDKIKMNGQEIEMAGISDSTARLATMLDNLERSDSLKRVEMHSII
HNRKRFNKEFQTFKVSFVFSPVSLENTTAESATASRREKGANHG

Nucleotide


Download         Length: 615 bp        

>NTDB_id=32300 VS_RS13520 WP_041472934.1 3023756..3024370(-) (pilN) [Vibrio atlanticus]
ATGTTGCATCAAATTAACCTGCTGCCGTGGCGTGATGAGATTCGCGCTCAGCACAAGAAGCGTTTTATCCACCTAGTCAT
TCTTGGCGTCATCATTGCACTTACAGGGCAATGGGCGGTTGGTCACTATTTTCAGGGTCAACAAGCCAAACAGCAAGCTC
GCCTCAATTATCTTAATCAATACATTGCCGAGCTCGACCGACAAATTCAATCGTTAAAAGTTGCAGAACAAGAACACAAA
GCCATTCTGACTCGACTTGATGTCGTGGAGTCGTTACAGCTTGGCCGCAATAAGACCACTGACTTTATGAACTTGATGCC
GGAGCTGATTCCTGAGGGCGTGTATGTCGACAAGATAAAGATGAATGGTCAGGAGATTGAGATGGCAGGTATCAGCGACA
GTACGGCTCGTCTCGCCACAATGTTGGACAATCTAGAGCGTTCTGATTCTCTTAAAAGGGTCGAGATGCACTCTATTATC
CATAACCGAAAGCGCTTCAATAAAGAGTTTCAGACCTTCAAGGTCTCTTTTGTGTTTAGCCCTGTTTCTTTAGAAAACAC
AACCGCAGAGAGCGCAACCGCGAGCAGAAGAGAGAAGGGGGCAAATCATGGCTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

65.761

90.196

0.593
  pilN Vibrio campbellii strain DS40M4

62.903

91.176

0.574

Multiple sequence alignment