Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   VS_RS13505 Genome accession   NC_011753
Coordinates   3020875..3022593 (-) Length   572 a.a.
NCBI ID   WP_012604945.1    Uniprot ID   -
Organism   Vibrio atlanticus     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3015875..3027593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS13485 (VS_2869) - 3016540..3017400 (-) 861 WP_012604942.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  VS_RS13490 (VS_2870) - 3017470..3018987 (-) 1518 WP_012604943.1 SPOR domain-containing protein -
  VS_RS13495 (VS_2871) aroB 3019067..3020155 (-) 1089 WP_012604944.1 3-dehydroquinate synthase -
  VS_RS13500 (VS_2872) aroK 3020180..3020698 (-) 519 WP_009848907.1 shikimate kinase AroK -
  VS_RS13505 (VS_2873) pilQ 3020875..3022593 (-) 1719 WP_012604945.1 type IV pilus secretin PilQ Machinery gene
  VS_RS13510 (VS_2874) pilP 3022629..3023147 (-) 519 WP_041472933.1 pilus assembly protein PilP Machinery gene
  VS_RS13515 (VS_2875) pilO 3023134..3023763 (-) 630 WP_012604947.1 type 4a pilus biogenesis protein PilO Machinery gene
  VS_RS13520 (VS_2876) pilN 3023756..3024370 (-) 615 WP_041472934.1 PilN domain-containing protein Machinery gene
  VS_RS13525 (VS_2877) pilM 3024354..3025379 (-) 1026 WP_041472935.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 62143.83 Da        Isoelectric Point: 4.3793

>NTDB_id=32297 VS_RS13505 WP_012604945.1 3020875..3022593(-) (pilQ) [Vibrio atlanticus]
MIKGISGLVSKALQGFAVSVMLVVSVFSYAESLPNQLENIDFRVNKEKDAVIIIELATSTAVVDVQRAQEGLSIELLNTQ
VNDDKLYLLDVKDFATSVEGIEVYKETPSTRLLATIAGDYQYEYNLKGRFIEVVISRPTIDEVTIEKNVLEKEGKVISIN
FQDIPVRNVLQLIADYNDFNLVVSDSVTGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEK
SRLEEELGELKSEIIKINFAKATDIADMIGGEGAVSMLSERGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVKQVQ
IEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQITPYDDNGGNSAIDDFLNVNLGATSPSASSIAFQVAKL
GSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLD
LSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSQVDKVPLLGDLPVLGALFRRSYENVGKSE
LLIFVTPKVVIQ

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=32297 VS_RS13505 WP_012604945.1 3020875..3022593(-) (pilQ) [Vibrio atlanticus]
ATGATTAAAGGAATAAGTGGATTAGTGAGCAAGGCTCTACAAGGTTTTGCTGTGTCTGTGATGTTGGTGGTTAGCGTGTT
CAGCTATGCCGAGAGCTTGCCAAATCAATTGGAAAATATTGATTTTAGGGTCAACAAGGAGAAAGACGCCGTCATCATTA
TCGAATTGGCAACCAGCACTGCTGTGGTGGATGTTCAACGTGCTCAGGAAGGTTTAAGTATCGAGTTACTCAATACTCAG
GTGAATGACGATAAGCTTTACCTCCTAGATGTGAAGGACTTCGCGACCTCAGTTGAAGGCATTGAGGTGTATAAGGAAAC
GCCCAGTACGCGATTGTTGGCAACGATCGCTGGTGACTATCAATATGAATACAACTTAAAAGGTCGCTTTATTGAGGTAG
TGATCAGTAGGCCTACTATTGATGAAGTGACAATAGAGAAAAATGTTTTAGAAAAAGAAGGCAAGGTGATATCGATTAAC
TTCCAAGATATCCCTGTACGTAATGTTTTGCAGCTTATTGCTGATTACAACGATTTCAATCTCGTTGTTTCTGATTCAGT
CACGGGTAATCTGACTTTACGTTTAGATGGTGTGCCTTGGCAGCAAGTTCTCGACATTATCTTGCAAGTTAAGGGGTTGG
ATAAGCGTGTTGATGGCAACGTTATCTTGGTGGCACCTAAAGCTGAACTCGACCTTAGAGAGCAACAAGCGCTAGAGAAA
TCTCGTTTGGAAGAAGAGCTAGGTGAACTCAAGTCGGAAATCATCAAGATTAACTTTGCCAAAGCCACCGACATTGCCGA
CATGATTGGTGGGGAAGGGGCGGTAAGCATGTTGTCCGAGCGAGGCTCGATTACCATTGATGAGCGAACTAACTCCCTGT
TGATCCGTGAATTGGAAGAAAACATTGCGGTGATACGAGGCATTATTGAATCGCTAGACATTCCCGTGAAGCAAGTTCAG
ATAGAAGCACGTATTGTCACTGTTACTGAGGGTAATCTTGATGAACTAGGAGTGCGTTGGGGCGTTTCCTCGACTAACGG
AAGCTTCAAAGTTGGCGGCTCGATAGAGGGCAACCATCCATCGCAAATTACGCCGTATGACGATAATGGTGGGAATAGTG
CGATTGACGATTTCCTCAACGTTAATTTAGGAGCAACTTCCCCGAGCGCGTCGAGTATTGCGTTTCAGGTAGCCAAGCTG
GGTTCTGATACCTTGCTCGATCTTGAATTGTCAGCACTGCAACAAGAGTCGAAAGCAGAGATTATTTCTAGCCCACGCTT
AATTACCACCAATAAAAAACCCGCTTATATTGAGCAAGGTACTGAAATCCCTTATTTAGAGTCTTCTTCAAGTGGTGCTA
CTTCAGTCGCATTTAAGAAAGCGGTATTGAGTCTCAAGGTGACTCCGCAGATCACACCCGACAATCGTTTGGTATTGGAT
TTGAGCGTGACTCAAGATAGGCCGGGGCAAGTGGTGAAAACCGGCACCGGTGAAGCTGTCGCCATTGACACGCAAAGAAT
TGGAACGCAAGTGCTTGTTAATAATGGTGAAACGGTCGTGTTAGGTGGTATTTTTCAACACAGTGTGAGCAGCCAAGTTG
ATAAAGTTCCACTATTAGGAGACCTTCCTGTTCTTGGCGCATTGTTCCGTCGTAGCTATGAAAATGTAGGCAAAAGTGAA
CTACTTATTTTTGTTACACCTAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(253-318)

Bacterial type II and III secretion system protein (Secretin)

(412-570)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

77.875

100

0.781
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

77.875

100

0.781
  pilQ Vibrio campbellii strain DS40M4

78.843

96.678

0.762
  pilQ Legionella pneumophila strain ERS1305867

42.674

95.455

0.407
  pilQ Legionella pneumophila strain Lp02

42.674

95.455

0.407
  pilQ Pseudomonas aeruginosa PAK

41.113

97.378

0.4
  comQ Acinetobacter baylyi ADP1

39.576

98.951

0.392
  pilQ Acinetobacter baumannii D1279779

38.169

100

0.386
  pilQ Acinetobacter baumannii strain A118

38.169

100

0.386

Multiple sequence alignment