Detailed information NTG0032296

Bioinformatically predicted

Overview

• Name: crp
• Type: Regulator
• Locus tag: VS_RS13420
• Genome accession: NC_011753
• Coordinates: 2999681..3000313 (+)
• Length: 210 a.a.
• NCBI ID: WP_004729651.1
• Uniprot ID: A0AAN0LME0
• Organism: Vibrio atlanticus
• Function: promote expression of competence genes (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	3000434..3001638	2999681..3000313	flank	121

Gene organization within MGE regions

Location: 2999681..3001638

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VS_RS13420 (VS_2855)	crp	2999681..3000313 (+)	633	WP_004729651.1	cAMP-activated global transcriptional regulator CRP	Regulator
VS_RS13430 (VS_2857)	-	3000434..3001638 (+)	1205	WP_086017860.1	IS3-like element ISVisp4 family transposase	-

Sequence

Protein

• Length: 210 a.a.
• Molecular weight: 23623.39 Da
• Isoelectric Point: 7.4009

>NTDB_id=32296 VS_RS13420 WP_004729651.1 2999681..3000313(+) (crp) [Vibrio atlanticus]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide

• Length: 633 bp

>NTDB_id=32296 VS_RS13420 WP_004729651.1 2999681..3000313(+) (crp) [Vibrio atlanticus]
ATGGTTCTAGGTAAACCCCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTTGGCTTGTTCGAAGAAGAC
CAAGAGCGTACTGCATGGGTTCGTGCAAAATCTCCTTGTGAAGTGGCTGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGATATTCTAATGCGTCTTTCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCAAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATTGTTGGTTGTTCTCGTGAGACCGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAGACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

• Cyclic nucleotide-binding domain (cNMP_binding) (23-109)

• Crp-like helix-turn-helix domain (HTH_Crp_2) (142-206)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
crp	Vibrio cholerae strain A1552	97.619	100	0.976
crp	Haemophilus influenzae Rd KW20	75	97.143	0.729
crp	Acinetobacter baumannii D1279779	47.343	98.571	0.467