Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   VS_RS13525 Genome accession   NC_011753
Coordinates   3024354..3025379 (-) Length   341 a.a.
NCBI ID   WP_041472935.1    Uniprot ID   -
Organism   Vibrio atlanticus     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3019354..3030379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS13500 (VS_2872) aroK 3020180..3020698 (-) 519 WP_009848907.1 shikimate kinase AroK -
  VS_RS13505 (VS_2873) pilQ 3020875..3022593 (-) 1719 WP_012604945.1 type IV pilus secretin PilQ Machinery gene
  VS_RS13510 (VS_2874) pilP 3022629..3023147 (-) 519 WP_041472933.1 pilus assembly protein PilP Machinery gene
  VS_RS13515 (VS_2875) pilO 3023134..3023763 (-) 630 WP_012604947.1 type 4a pilus biogenesis protein PilO Machinery gene
  VS_RS13520 (VS_2876) pilN 3023756..3024370 (-) 615 WP_041472934.1 PilN domain-containing protein Machinery gene
  VS_RS13525 (VS_2877) pilM 3024354..3025379 (-) 1026 WP_041472935.1 type IV pilus assembly protein PilM Machinery gene
  VS_RS13530 (VS_2878) - 3025531..3028089 (+) 2559 WP_012604950.1 penicillin-binding protein 1A -
  VS_RS13535 (VS_2879) oxyR 3028202..3029095 (-) 894 WP_012604951.1 DNA-binding transcriptional regulator OxyR -
  VS_RS13540 (VS_2880) - 3029317..3030045 (+) 729 WP_009848898.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 38169.58 Da        Isoelectric Point: 6.3451

>NTDB_id=32301 VS_RS13525 WP_041472935.1 3024354..3025379(-) (pilM) [Vibrio atlanticus]
MGSSLITGIDINHHSIKAVVLKPVGELYALVGYKELPISDDIFTANHTLEYQKTVKKLKELRKGLPFGCRNVAISVPDNT
VISKVLQIESDLEDREKEFSIYQTFAHQSPFPIEELSLDFVKLEDKRFGKGSTSSYQIYATRKEVVDSRADALNKAGFKP
VVIDTQAHGLLNIWQLASRLYPEKSNWLLVDVGVDQTSLGIIPQDSAPFYKDIAFGTQDLRGTDSPSYTEGVFGNAEDTH
RFIVNLVEKLKRQLQLYSSVNALEPISGIWLMGEGASIPMVVEDLERHFQMSCESLNPLSLFENKVAKRHQLPMNWQHFG
IAAGMAMSGLKWQGEKHVASN

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=32301 VS_RS13525 WP_041472935.1 3024354..3025379(-) (pilM) [Vibrio atlanticus]
ATGGGTTCATCATTAATTACAGGTATAGATATAAATCATCACAGCATCAAAGCCGTGGTACTAAAACCCGTGGGGGAGTT
GTATGCCCTAGTGGGATACAAAGAGCTGCCGATTTCGGACGACATTTTTACAGCTAACCATACTTTGGAGTATCAGAAAA
CTGTTAAGAAACTTAAAGAACTTAGGAAAGGACTGCCTTTTGGCTGTCGCAACGTCGCCATTTCGGTACCCGATAACACG
GTGATCAGCAAAGTACTGCAAATAGAGAGTGATTTAGAAGACAGAGAAAAGGAGTTTTCTATCTATCAAACCTTTGCTCA
TCAATCTCCCTTTCCTATCGAGGAGCTGAGTTTAGATTTTGTAAAGCTGGAAGACAAACGATTTGGTAAAGGATCGACAA
GTAGCTATCAGATATATGCGACTCGTAAGGAAGTTGTAGACAGTCGAGCGGATGCTTTAAATAAAGCCGGATTTAAACCT
GTTGTCATCGACACCCAAGCACATGGTCTGCTCAATATTTGGCAGTTGGCTTCACGCCTTTATCCTGAAAAAAGTAACTG
GTTGCTGGTGGACGTGGGAGTTGACCAAACGTCGTTAGGCATTATCCCGCAGGATTCAGCACCTTTCTATAAAGACATCG
CCTTTGGTACTCAAGATCTTCGCGGTACTGACAGCCCGAGTTATACAGAAGGTGTTTTCGGCAACGCAGAGGACACACAT
CGGTTTATTGTTAATTTGGTTGAAAAGCTTAAGCGACAGTTGCAACTCTATTCCTCAGTGAATGCACTTGAGCCGATATC
CGGGATCTGGCTGATGGGCGAAGGAGCCAGCATTCCGATGGTAGTTGAAGATCTAGAGCGCCATTTTCAGATGAGTTGTG
AATCGCTCAATCCTTTATCGTTATTTGAGAACAAGGTGGCGAAGCGGCACCAACTGCCGATGAACTGGCAACATTTCGGC
ATTGCCGCGGGTATGGCGATGAGTGGACTCAAGTGGCAAGGAGAGAAGCATGTTGCATCAAATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-220)

Type IV pilus assembly protein PilM; (PilM_2)

(242-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

53.982

99.413

0.537
  pilM Vibrio campbellii strain DS40M4

47.076

100

0.472

Multiple sequence alignment