Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   VS_RS13510 Genome accession   NC_011753
Coordinates   3022629..3023147 (-) Length   172 a.a.
NCBI ID   WP_041472933.1    Uniprot ID   -
Organism   Vibrio atlanticus     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3017629..3028147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS13495 (VS_2871) aroB 3019067..3020155 (-) 1089 WP_012604944.1 3-dehydroquinate synthase -
  VS_RS13500 (VS_2872) aroK 3020180..3020698 (-) 519 WP_009848907.1 shikimate kinase AroK -
  VS_RS13505 (VS_2873) pilQ 3020875..3022593 (-) 1719 WP_012604945.1 type IV pilus secretin PilQ Machinery gene
  VS_RS13510 (VS_2874) pilP 3022629..3023147 (-) 519 WP_041472933.1 pilus assembly protein PilP Machinery gene
  VS_RS13515 (VS_2875) pilO 3023134..3023763 (-) 630 WP_012604947.1 type 4a pilus biogenesis protein PilO Machinery gene
  VS_RS13520 (VS_2876) pilN 3023756..3024370 (-) 615 WP_041472934.1 PilN domain-containing protein Machinery gene
  VS_RS13525 (VS_2877) pilM 3024354..3025379 (-) 1026 WP_041472935.1 type IV pilus assembly protein PilM Machinery gene
  VS_RS13530 (VS_2878) - 3025531..3028089 (+) 2559 WP_012604950.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19229.59 Da        Isoelectric Point: 10.8253

>NTDB_id=32298 VS_RS13510 WP_041472933.1 3022629..3023147(-) (pilP) [Vibrio atlanticus]
MKFSSVLLSLLLLLVLSGCKANQDSLEGFVRKVEAKARKEVEKLVPETEFLAATYQRHAFRPPFELPKEAMVQNQPLVKK
DCWQPNARSRIGKLEKYPLSKLRLRGVMGSGTSVSGLVQTPKGNVVNVKKGQFIGLNNGRVTKVTSQYVQINETLPDGLG
CWHKRNVRLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=32298 VS_RS13510 WP_041472933.1 3022629..3023147(-) (pilP) [Vibrio atlanticus]
ATGAAATTCAGTAGCGTCCTTTTGTCCCTATTGTTACTGCTTGTGCTTTCAGGCTGTAAAGCCAATCAGGATTCGTTAGA
AGGTTTTGTGAGGAAAGTTGAAGCTAAGGCGAGAAAAGAGGTAGAAAAACTTGTCCCAGAAACGGAGTTCTTAGCCGCAA
CTTATCAACGCCACGCCTTTCGCCCTCCCTTTGAACTTCCTAAAGAAGCCATGGTTCAAAATCAACCCTTGGTGAAGAAA
GATTGTTGGCAGCCGAACGCTCGCTCTCGTATTGGCAAGTTAGAAAAATACCCGCTGAGTAAGCTGCGTTTAAGAGGCGT
AATGGGCAGTGGAACAAGCGTTTCAGGGTTAGTACAAACCCCAAAAGGGAACGTGGTCAATGTGAAAAAAGGTCAGTTTA
TTGGCTTAAACAATGGTCGAGTTACTAAGGTGACGAGCCAGTATGTACAGATTAATGAAACTCTTCCAGATGGTTTAGGT
TGTTGGCATAAACGCAACGTTAGGCTCGCTCTGAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

63.372

100

0.634
  pilP Vibrio campbellii strain DS40M4

56.024

96.512

0.541

Multiple sequence alignment