Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SMI_RS05385 Genome accession   NC_013853
Coordinates   1046723..1049998 (-) Length   1091 a.a.
NCBI ID   WP_012972512.1    Uniprot ID   -
Organism   Streptococcus mitis B6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1041723..1054998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS05375 (smi_1065) - 1041880..1043058 (-) 1179 WP_000174759.1 hypothetical protein -
  SMI_RS05380 (smi_1066) rexA 1043076..1046726 (-) 3651 WP_000802630.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SMI_RS05385 (smi_1067) rexB 1046723..1049998 (-) 3276 WP_012972512.1 ATP-dependent nuclease subunit B Machinery gene
  SMI_RS05390 (smi_1068) - 1050204..1051370 (+) 1167 WP_000163009.1 IS30-like element ISSmi1 family transposase -
  SMI_RS05395 (smi_1069) - 1051672..1052481 (+) 810 WP_000593585.1 Cof-type HAD-IIB family hydrolase -
  SMI_RS05400 (smi_1070) - 1052623..1053531 (+) 909 WP_000859641.1 ABC transporter ATP-binding protein -
  SMI_RS05405 (smi_1071) - 1053542..1054294 (+) 753 WP_000581961.1 ABC transporter permease -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124849.45 Da        Isoelectric Point: 5.4115

>NTDB_id=32299 SMI_RS05385 WP_012972512.1 1046723..1049998(-) (rexB) [Streptococcus mitis B6]
MKLLYTDIRTSLTEILTREAEELVAAGKRIFYIAPNSLSFEKERAVLQCLSQQASFAITVTRFAQMARYLVLNDLPAKTS
LDDIGLGMAFYKCLAELDPKDLRVYGAIKQDPQFIQQLIELYHEMTKAQMSFLDLESLTDEDKRADLLLIFEKVTAYLNQ
GQLAQGSQLSHLIEAIENDKVSSDFTQIALVIDGFTRFSAEEEWIVDLLHGKGVEIVIGAYASKKAYTSPFAEGNLYQAS
VEFLHHLASKYQTPAQDYSQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLH
ENSNLSYKHLRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQFVESILALKRYRFRQEDLINLLRTGLYTDL
SQTDIDAFEQYIRYLGINGLPAFQQTFTKSHHGKFNLERLNALRLRILTPLETLFASRKQKAENLLQKWNSFLKESSVTK
QLQDLTATMEAVEQERQTEVWKAFCHVLEQFATVFAGSQVNLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
TDFVYAIGLTQDNLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKNRYTMLSLVNSARKELILSAPSLFNESE
SKESAYLQELVHFGFSRKEKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEPSDREQDLTFVKVLARVMGKKLDQQGLENP
ALPTSPSSKQLAKDTLQALYPAEQEFYLSTSGLTEFYRNQYSYFLRYVLGLQEELRLHPDARSHGNFLHRIFERALQLPD
EDSFDQRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIKEEANFGGKEQSFIQLDNGRSV
FVRGKVDRIDRLKADGAIGVVDYKSSMTQFQFPHFFNGLNSQLPTYLAALKKEGEQNFFGAMYLEMAEPVQSLMVVKSLA
GAIVEASKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILEGQFAINPYTENGRSIAPYV
QQHQAITGFEANYHLDQARFLEKLDLADSKRLVGEKLKQAWFEKIREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=32299 SMI_RS05385 WP_012972512.1 1046723..1049998(-) (rexB) [Streptococcus mitis B6]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACAGAAATTCTAACTAGAGAGGCAGAGGAGCTAGTTGCTGCTGG
CAAGCGGATCTTCTATATCGCTCCCAACTCCCTTTCTTTTGAAAAAGAACGCGCCGTGCTGCAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACCGTCACGCGCTTTGCTCAAATGGCTCGTTATCTGGTCTTGAATGATTTGCCTGCTAAAACCAGT
CTAGATGACATTGGGCTTGGGATGGCTTTTTATAAATGCCTTGCCGAACTTGATCCTAAGGATTTACGTGTTTATGGAGC
TATCAAGCAGGATCCTCAATTTATCCAGCAGTTGATTGAACTTTACCACGAGATGACCAAGGCTCAGATGAGTTTTTTGG
ACTTGGAGAGTTTGACGGATGAGGACAAGCGAGCAGACTTACTCTTGATTTTTGAGAAAGTAACGGCCTATCTCAATCAA
GGCCAGTTGGCTCAAGGAAGTCAGTTGTCCCATTTGATTGAGGCTATTGAGAATGACAAAGTTAGTAGTGATTTTACTCA
AATCGCCTTGGTTATTGATGGATTTACCCGTTTTTCTGCTGAGGAAGAGTGGATTGTGGACTTACTTCATGGCAAGGGAG
TTGAGATTGTTATTGGGGCTTATGCTAGTAAGAAAGCTTATACCAGTCCATTCGCTGAAGGCAATCTCTATCAAGCCAGT
GTGGAGTTTCTCCATCATCTGGCCTCTAAATACCAAACGCCTGCTCAGGACTATTCTCAAACTCATGAGAAGATGGATAG
TTTTGACAAGGCCTCTCGTTTGTTGGAGTCTTCTTATGACTTTTCAGAACTCGCTTTAGATGTCGATGAGAAGGATCGTG
AAAACTTACAAATCTGGTCTTGCTTGACACAAAAGGAAGAGTTAGAGTTGGTAGCCCGTAGCATTCGTCAGAAATTACAC
GAGAACTCAAATCTGAGTTACAAGCATCTTCGTATTCTCTTGGGGGATGTAGCTTCTTATCAGTTATCTCTAAAAACGAT
TTTTGACCAGTATCAGATTCCTTTTTATCTAGGTAGAAGCGAATCCATGGCGCATCATCCCTTGACACAGTTTGTTGAGT
CTATTTTGGCTTTAAAACGTTATCGTTTCCGTCAGGAAGATTTGATAAACCTTCTTAGAACAGGTCTATATACCGACCTT
AGTCAAACTGATATTGATGCTTTTGAGCAATATATCCGCTATCTTGGTATCAATGGCTTGCCAGCCTTTCAGCAAACCTT
TACCAAATCCCACCATGGAAAATTTAATCTGGAACGTTTAAATGCTCTTCGTCTGCGTATTTTAACACCTCTTGAAACCC
TCTTTGCCAGTCGAAAACAAAAGGCTGAAAATCTCCTACAAAAATGGAATAGCTTTCTAAAAGAAAGTTCAGTGACCAAG
CAGTTACAAGATTTGACAGCCACTATGGAAGCTGTAGAGCAGGAAAGACAGACTGAAGTTTGGAAGGCATTCTGTCATGT
TTTAGAACAATTTGCGACCGTTTTTGCTGGTTCACAAGTTAATCTAGAGGACTTCCTAGCCTTGCTTCATTCTGGAATGA
GCCTATCTCAATATCGCACCATTCCAGCAACAGTAGACACAGTTCTGGTTCAGAGCTATGATTTGATTGCTCCTCTGACT
ACTGACTTTGTCTATGCCATTGGGCTGACTCAGGACAATTTACCAAAAATAGCGCAAAACACCAGTCTTTTGACAGATGA
AGAAAGACAAAGCTTAAACCAAGCGACAGAGGAAGGGGCACAATTGCTGATTGCCAGCAGTGAAAACCTCAAGAAAAATC
GCTATACTATGCTTTCCTTGGTTAATTCTGCTCGTAAAGAGTTAATCTTGTCGGCTCCAAGCCTTTTTAATGAAAGTGAA
AGTAAGGAATCTGCCTATCTTCAAGAGCTGGTCCATTTTGGATTTAGTCGGAAAGAGAAGAGGATGAATCACAAAGGGCT
GTCTAAGGAAGATATGGGCTCATATCACAGTCTTTTGTCCAGTCTGGTTGCCTATCACCAGCAGGGCGAGCCGAGTGATA
GGGAGCAAGATTTGACCTTTGTCAAGGTTCTGGCGCGTGTGATGGGTAAAAAACTAGACCAGCAAGGTTTGGAAAATCCT
GCCCTCCCAACCAGTCCAAGCAGTAAGCAGTTGGCTAAGGATACCTTACAAGCTCTCTATCCTGCTGAACAGGAATTTTA
CCTGTCTACATCTGGTTTGACGGAGTTTTACCGGAACCAATACAGTTATTTCCTCCGCTACGTGTTAGGCTTGCAGGAGG
AATTGCGCCTACATCCAGATGCTCGTAGTCATGGGAATTTCTTACACCGTATCTTTGAGCGGGCCTTGCAGTTACCTGAC
GAAGATTCTTTTGATCAACGTTTGGAACAGGCTATCCAAGAAACCAGTCAAGAACGGGAATTTGAAGCCATTTATCAAGA
AAGTTTGGAAGCCCAGTTTACCAAGGAAGTTCTGCTCGATGTAGCTCGCACGACTGGTCACATTCTCCGCCATAATCCAG
CCATCGAAACCATCAAAGAAGAGGCAAATTTCGGTGGGAAAGAGCAATCCTTTATTCAATTGGACAATGGTCGCAGTGTC
TTTGTACGAGGTAAGGTGGACCGGATTGATCGTTTGAAAGCTGATGGGGCGATAGGAGTGGTAGACTACAAATCCAGTAT
GACTCAGTTCCAGTTTCCTCATTTCTTTAATGGGCTTAATTCCCAACTGCCAACCTATTTAGCTGCCCTTAAAAAGGAAG
GGGAGCAGAACTTTTTTGGTGCCATGTACTTGGAAATGGCTGAGCCTGTCCAATCTCTGATGGTCGTTAAAAGTCTGGCA
GGTGCAATAGTAGAAGCTAGCAAGTCAATGAAATACCAAGGCCTCTTTTTAGAAAAAGAAAGCAGTCATTTGGGCGAATT
TTACAATAAAAACAAGGCCAATCAGCTGACGGATGAGGAATTCCAGCTCCTACTGGACTACAATGCCCATCTTTACAAGA
AAGCGGCTGAGAAGATTTTAGAAGGCCAGTTCGCCATTAATCCTTATACTGAAAATGGCAGAAGTATTGCACCGTATGTT
CAGCAACACCAAGCCATTACTGGATTTGAAGCCAATTACCACTTGGACCAAGCCCGTTTCCTAGAAAAATTGGACTTAGC
TGACAGCAAGCGTCTGGTCGGAGAAAAACTCAAGCAAGCTTGGTTTGAAAAAATAAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

94.134

100

0.941

Multiple sequence alignment