Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VS_RS01475 Genome accession   NC_011753
Coordinates   316458..317015 (+) Length   185 a.a.
NCBI ID   WP_009847868.1    Uniprot ID   A0A2N7NKE0
Organism   Vibrio atlanticus     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 311458..322015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS01460 (VS_0320) uvrA 311476..314307 (-) 2832 WP_012603128.1 excinuclease ABC subunit UvrA -
  VS_RS01465 (VS_0321) galU 314505..315377 (-) 873 WP_012603129.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VS_RS01470 (VS_0322) qstR 315532..316179 (-) 648 WP_012603130.1 LuxR C-terminal-related transcriptional regulator Regulator
  VS_RS01475 (VS_0323) ssb 316458..317015 (+) 558 WP_009847868.1 single-stranded DNA-binding protein Machinery gene
  VS_RS01480 (VS_0324) csrD 317177..319192 (+) 2016 WP_012603131.1 RNase E specificity factor CsrD -
  VS_RS01485 (VS_0325) - 319195..320637 (+) 1443 WP_012603132.1 MSHA biogenesis protein MshI -
  VS_RS01490 (VS_0326) pilO 320637..321284 (+) 648 WP_009847865.1 type 4a pilus biogenesis protein PilO -
  VS_RS01495 (VS_0327) - 321277..321609 (+) 333 WP_012603133.1 hypothetical protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20430.55 Da        Isoelectric Point: 5.2358

>NTDB_id=32269 VS_RS01475 WP_009847868.1 316458..317015(+) (ssb) [Vibrio atlanticus]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGSWGQPQQPQQQQQQYSAPAQQQPKA
PQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=32269 VS_RS01475 WP_009847868.1 316458..317015(+) (ssb) [Vibrio atlanticus]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGTGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACGCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACAGAAGTCGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGCGGTGCTCCTGCCCAAGGTGGTATGGGTAACAACCAACAGC
AAGGTAGTTGGGGGCAGCCACAGCAGCCACAACAACAGCAGCAACAATACAGTGCGCCAGCTCAACAGCAGCCGAAAGCA
CCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCGATGGATTTTGATGATGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7NKE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

82.258

100

0.827
  ssb Glaesserella parasuis strain SC1401

57.447

100

0.584
  ssb Neisseria meningitidis MC58

47.568

100

0.476
  ssb Neisseria gonorrhoeae MS11

47.568

100

0.476

Multiple sequence alignment