Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   VS_RS01470 Genome accession   NC_011753
Coordinates   315532..316179 (-) Length   215 a.a.
NCBI ID   WP_012603130.1    Uniprot ID   -
Organism   Vibrio atlanticus     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 310532..321179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS01460 (VS_0320) uvrA 311476..314307 (-) 2832 WP_012603128.1 excinuclease ABC subunit UvrA -
  VS_RS01465 (VS_0321) galU 314505..315377 (-) 873 WP_012603129.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VS_RS01470 (VS_0322) qstR 315532..316179 (-) 648 WP_012603130.1 LuxR C-terminal-related transcriptional regulator Regulator
  VS_RS01475 (VS_0323) ssb 316458..317015 (+) 558 WP_009847868.1 single-stranded DNA-binding protein Machinery gene
  VS_RS01480 (VS_0324) csrD 317177..319192 (+) 2016 WP_012603131.1 RNase E specificity factor CsrD -
  VS_RS01485 (VS_0325) - 319195..320637 (+) 1443 WP_012603132.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25148.28 Da        Isoelectric Point: 9.2438

>NTDB_id=32268 VS_RS01470 WP_012603130.1 315532..316179(-) (qstR) [Vibrio atlanticus]
MRKSRYARTLHFLCIDPNETYLHLKEIEKHLSIILYKMTPDELMLVDRKQSNRILLVDYKEVPQLLAICPNLPVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYNTDQKDKIARGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=32268 VS_RS01470 WP_012603130.1 315532..316179(-) (qstR) [Vibrio atlanticus]
ATGAGAAAATCTCGATACGCTCGCACTTTACACTTTCTGTGCATCGACCCAAACGAAACCTATCTACACTTAAAAGAAAT
CGAAAAGCACTTATCCATTATTCTCTACAAAATGACGCCAGATGAATTGATGCTGGTTGATAGAAAGCAGAGCAATCGTA
TCCTTCTTGTTGATTACAAAGAGGTACCACAACTACTGGCTATTTGTCCTAACCTCCCCGTTATGTGGAAAAATCATGAA
ATAATCTTATTCAATGTGCCTCAGCAACTTCCTACCTCTGAGCTGCTAACCTACGGGGTATTAAAAGGACTCTTTTATAA
CACAGATCAAAAGGACAAGATTGCTCGTGGTCTTCAAGAAGTGATCGATGGTGATAATTGGTTACCAAGGAAGGTGACTA
ATCAGCTTCTGTTTTATTATCGTAATATGGTCAATACCAATACAACCCCAACCAATGTTGATTTAACTATTCGTGAAATC
CAAGTAATTCGCTGCCTTCAATCAGGATCATCAAATACCCAAATAGCTGATGACCTGTTCATTAGCGAATTCACGGTCAA
ATCCCACCTCTATCAAATATTCCGTAAATTAGCGGTGAAAAATAGAGTCCAAGCTATTGCATGGGCAAACCAAAACTTGC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

53.488

100

0.535
  qstR Vibrio campbellii strain DS40M4

52.558

100

0.526
  qstR Vibrio cholerae strain A1552

48.131

99.535

0.479

Multiple sequence alignment