Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EBA02_RS20105 Genome accession   NZ_CP033183
Coordinates   4191797..4193317 (+) Length   506 a.a.
NCBI ID   WP_133260307.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain CFBP1951     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 4193398..4194196 4191797..4193317 flank 81


Gene organization within MGE regions


Location: 4191797..4194196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBA02_RS20105 (EBA02_20085) comM 4191797..4193317 (+) 1521 WP_133260307.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EBA02_RS20110 (EBA02_20090) - 4193925..4193926 (-) 2 WP_101807261.1 IS5 family transposase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54089.94 Da        Isoelectric Point: 8.4375

>NTDB_id=322167 EBA02_RS20105 WP_133260307.1 4191797..4193317(+) (comM) [Xanthomonas oryzae pv. oryzae strain CFBP1951]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQMVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALTDYEFLGELALTGELRGIDGVLPAALATAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLDGSQKAPAAKLVVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLIGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSTSGRGLDLARWRQRPYRAPHHTASAVALVGGGTLPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSNDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRCRVVAARQRQLARGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALSAASAG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=322167 EBA02_RS20105 WP_133260307.1 4191797..4193317(+) (comM) [Xanthomonas oryzae pv. oryzae strain CFBP1951]
ATGAGTCTGGCGTTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATGGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTACGTGCCGCGCTGC
TGTGCGCGCAGTTCGAATTCCCCGCACGGCGCATTACCATCAATCTGGCCCCGGCCGATCTGCCTAAGGAAGGCGGACGG
TTCGATTTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAAATCGACCGCCAGGCCCTGACCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGCATCGATGGCGTGCTGCCCGCGGCGCTGGCGACCGCGCAGGCAGGGC
GACGGCTGATCGTGCCGCTTGCCAACGGTGCCGAAGCCGCGATTGCCGGGCACGTCGAAGCCTTCACCGCACGCACGCTG
CTTGAGGTGTGCGCTACGCTCGACGGCAGCCAGAAAGCACCTGCCGCCAAATTGGTGGTGCAGGCGCTCGGCGCCCGTGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCATCATC
TCCTTCTGATCGGCAGCCCTGGCTGCGGCAAGACCCTGTTGGCCTCGCGCCTGCCTGGGCTATTGCCCGAAGCCAGCGAA
GCCGAAGCGCTGGAAACCGCGGCCATTACCTCCACCAGCGGCCGCGGACTGGATCTGGCCCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCTCACCACACCGCCAGCGCAGTCGCCTTGGTTGGCGGTGGCACGCTTCCGCGCCCCGGCGAGATCTCGCTGG
CCCACAACGGTGTCTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGGCAGACACTCGAGGTGCTGCGCGAGCCGTTGGAA
TCGGGTCTGGTCACGATCTCACGCGCGGCGCGCAGCGTCGACTTCCCTGCACGCTTCCAGCTGGTCGCTGCGATGAACCC
ATGCCCATGCGGTTGGGCAGGCGACGGCAGCGGGCGCTGCCGCTGCAGCAACGACAGCATCCGCCGCTATCGCAGCCGTA
TCTCCGGCCCGTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTACCACCGCAAGCGCTGCGTAGCGGCAAC
CTCGGCGAGGACAGCGCCAGCGTGCGTTGCCGCGTGGTCGCCGCGCGGCAACGCCAGCTTGCGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGCCATTGCCGTCTGCAGCACGACGACCAAGTGCTGCTCGAGCGCGCCATCG
AACACCTGCAGCTGTCTGCGCGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GACATTGCCACGCGCCATCTCACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCCGCCAGCGCGGGGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.445

100

0.571
  comM Vibrio campbellii strain DS40M4

54.118

100

0.545
  comM Haemophilus influenzae Rd KW20

54.118

100

0.545
  comM Glaesserella parasuis strain SC1401

53.846

100

0.54
  comM Legionella pneumophila str. Paris

50.688

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.688

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.652

100

0.457

Multiple sequence alignment