Detailed information NTG0321939

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: EBA15_RS20300
• Genome accession: NZ_CP033171
• Coordinates: 4219546..4221066 (+)
• Length: 506 a.a.
• NCBI ID: WP_053514121.1
• Uniprot ID: -
• Organism: Xanthomonas oryzae pv. oryzae strain T19
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	4221147..4221945	4219546..4221066	flank	81

Gene organization within MGE regions

Location: 4219546..4221945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EBA15_RS20300 (EBA15_20245)	comM	4219546..4221066 (+)	1521	WP_053514121.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
EBA15_RS20305 (EBA15_20250)	-	4221674..4221675 (-)	2	WP_101807261.1	IS5 family transposase	-

Sequence

Protein

• Length: 506 a.a.
• Molecular weight: 54060.85 Da
• Isoelectric Point: 8.0973

>NTDB_id=321939 EBA15_RS20300 WP_053514121.1 4219546..4221066(+) (comM) [Xanthomonas oryzae pv. oryzae strain T19]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQMVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALTDYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLDGSQKAPAAELVVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLIGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSTSGRGLDLARWRQRPYRAPHHTASAVALVGGGTLPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSNDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRCRVVAARQRQLARGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALSAASAG

Nucleotide

• Length: 1521 bp

>NTDB_id=321939 EBA15_RS20300 WP_053514121.1 4219546..4221066(+) (comM) [Xanthomonas oryzae pv. oryzae strain T19]
ATGAGTCTGGCGTTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATGGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTACGTGCCGCGCTGC
TGTGCGCGCAGTTCGAATTCCCCGCACGGCGCATTACCATCAATCTGGCCCCGGCCGATCTGCCTAAGGAAGGCGGACGG
TTCGATTTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAAATCGACCGCCAGGCCCTGACCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGCATCGATGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCAGGGC
GACGGCTGATCGTGCCGCTTGCCAACGGTGCCGAAGCCGCGATTGCCGGGCACGTCGAAGCCTTCACCGCACGCACGCTG
CTTGAGGTGTGCGCTACGCTCGACGGCAGCCAGAAAGCACCTGCCGCCGAATTGGTGGTGCAGGCGCTCGGCGCCCGTGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCATCATC
TCCTTCTGATCGGCAGCCCTGGCTGCGGCAAGACCCTGTTGGCCTCGCGCCTGCCTGGGCTATTGCCCGAAGCCAGCGAA
GCCGAAGCGCTGGAAACCGCGGCCATTACCTCCACCAGCGGCCGCGGACTGGATCTGGCCCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCTCACCACACCGCCAGCGCAGTCGCCTTGGTTGGCGGTGGCACGCTTCCGCGCCCCGGCGAGATCTCGCTGG
CCCACAACGGTGTCTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGGCAGACACTCGAGGTGCTGCGCGAGCCGTTGGAA
TCGGGTCTGGTCACGATCTCACGCGCGGCGCGCAGCGTCGACTTCCCTGCACGCTTCCAGCTGGTCGCTGCGATGAACCC
ATGCCCATGCGGTTGGGCAGGCGACGGCAGCGGGCGCTGCCGCTGCAGCAACGACAGCATCCGCCGCTATCGCAGCCGTA
TCTCCGGCCCGTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTACCACCGCAAGCGCTGCGTAGCGGCAAC
CTCGGCGAGGACAGCGCCAGCGTGCGTTGCCGCGTGGTCGCCGCGCGGCAACGCCAGCTTGCGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGCCATTGCCGTCTGCAGCACGACGACCAAGTGCTGCTCGAGCGCGCCATCG
AACACCTGCAGCTGTCTGCGCGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GACATTGCCACGCGCCATCTCACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCCGCCAGCGCGGGGTA
G

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-394)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	56.641	100	0.573
comM	Haemophilus influenzae Rd KW20	54.314	100	0.547
comM	Vibrio campbellii strain DS40M4	54.118	100	0.545
comM	Glaesserella parasuis strain SC1401	54.043	100	0.541
comM	Legionella pneumophila str. Paris	51.697	99.012	0.512
comM	Legionella pneumophila strain ERS1305867	51.697	99.012	0.512
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.85	100	0.459