Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EBA31_RS24910 Genome accession   NZ_CP033162
Coordinates   5198425..5199948 (+) Length   507 a.a.
NCBI ID   WP_122080441.1    Uniprot ID   -
Organism   Serratia sp. P2ACOL2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5193425..5204948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBA31_RS24885 (EBA31_24920) ilvE 5193627..5194553 (-) 927 WP_020837487.1 branched-chain-amino-acid transaminase -
  EBA31_RS24890 (EBA31_24925) ilvM 5194576..5194833 (-) 258 WP_020837489.1 acetolactate synthase 2 small subunit -
  EBA31_RS24895 (EBA31_24930) ilvG 5194830..5196476 (-) 1647 WP_020837490.1 acetolactate synthase 2 catalytic subunit -
  EBA31_RS24900 (EBA31_24935) ilvL 5196619..5196717 (-) 99 WP_015962288.1 ilv operon leader peptide -
  EBA31_RS24905 (EBA31_24940) - 5196851..5198083 (-) 1233 WP_122080440.1 MFS transporter -
  EBA31_RS24910 (EBA31_24945) comM 5198425..5199948 (+) 1524 WP_122080441.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EBA31_RS24915 (EBA31_24950) - 5199976..5200314 (-) 339 WP_020837497.1 DUF413 domain-containing protein -
  EBA31_RS24920 (EBA31_24955) hdfR 5200434..5201261 (+) 828 WP_041415741.1 HTH-type transcriptional regulator HdfR -
  EBA31_RS24925 (EBA31_24960) yjfF 5201266..5202258 (-) 993 WP_122080442.1 galactofuranose ABC transporter, permease protein YjfF -
  EBA31_RS24930 (EBA31_24965) ytfT 5202255..5203256 (-) 1002 WP_162302921.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  EBA31_RS24935 (EBA31_24970) ytfR 5203274..5204788 (-) 1515 WP_122080444.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54571.95 Da        Isoelectric Point: 7.9709

>NTDB_id=321895 EBA31_RS24910 WP_122080441.1 5198425..5199948(+) (comM) [Serratia sp. P2ACOL2]
MSLAVIYTRATLGVQAPSVTVEVHISNGLPGLTMVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPADKLAHYEFLGELALSGALRGVSGAIPAALAAMESGRQLVLATANGPEVGLITQSKTLVADHL
LEVCAFVLGKEDLPVAHAPPAMNNAPEPADLQDILGQEQAKRALEIAAAGGHNLLLVGPPGTGKTMLASRLNGLLPPLTD
QEALESIAVASLLHHAAQALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRVLDALREPLE
SGEIVVSRASAKVCFPARVQLIAAMNPSPTGHYQGMHNRASPQQVLRYLGRLSGPFLDRFDLSIEVPLLPPGLLSKKRIA
GENSAQVRERVLLARERQLSRAGKINALLNNHEVERDCRLNDADADFLETTLNRLGLSVRAWQRILKVARTLADLAGDRA
IDKRHLSEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=321895 EBA31_RS24910 WP_122080441.1 5198425..5199948(+) (comM) [Serratia sp. P2ACOL2]
ATGTCACTGGCAGTGATCTATACCCGGGCCACACTGGGCGTTCAGGCCCCTTCGGTTACGGTGGAAGTGCATATCAGCAA
TGGGTTGCCCGGCCTGACGATGGTCGGCCTGCCGGAAACTACGGTTAAAGAGGCGCGTGATCGAGTGCGCAGCGCCTTGA
TCAATAACGGTTTCACCTTTCCCGCACGGCGTATTACCGTCAATCTGGCACCGGCCGATCTGCCCAAGGAAGGCGGTCGC
TATGATCTACCGATTGCGCTGGCTATCCTGGCGGCTTCCGAACAGCTGCCGGCCGATAAGCTGGCTCACTATGAATTCCT
TGGCGAACTGGCATTATCTGGCGCTCTACGGGGCGTCAGCGGAGCCATCCCCGCAGCGCTGGCCGCCATGGAGTCAGGAC
GGCAATTGGTTTTGGCGACCGCCAATGGGCCGGAGGTGGGGCTAATTACGCAGAGCAAAACCCTGGTGGCGGACCACCTG
TTGGAGGTGTGCGCCTTTGTGTTGGGTAAAGAGGATTTACCGGTAGCCCATGCGCCGCCGGCAATGAACAACGCGCCCGA
ACCGGCCGATCTGCAGGATATTCTGGGTCAGGAACAGGCAAAGCGCGCGCTGGAAATCGCCGCGGCCGGCGGCCACAACC
TGCTGCTGGTGGGACCGCCAGGGACCGGGAAAACCATGTTGGCCAGCCGCTTGAATGGCCTTCTCCCGCCGCTGACCGAT
CAGGAAGCACTGGAAAGCATCGCGGTGGCCAGCCTGCTGCATCATGCTGCGCAAGCGCTGCCATGGCGACAGCGGCCGTT
TCGCGCACCGCACCATAGCGCCTCGATGGCAGCTCTGGTCGGCGGGGGTTCGCTGCCGAGGCCGGGTGAAATTTCCATGG
CGCACAATGGTGTCCTGTTTCTGGATGAACTGCCCGAATTCGAAAGGCGGGTACTGGATGCGCTGCGCGAACCGCTGGAG
TCCGGCGAGATAGTGGTTTCACGCGCCAGCGCCAAAGTCTGCTTCCCGGCACGGGTACAGCTGATCGCCGCCATGAACCC
CAGCCCTACCGGGCATTACCAGGGCATGCATAACCGCGCATCGCCACAGCAAGTCCTGCGCTATCTGGGGCGGCTTTCAG
GGCCCTTTCTCGATCGTTTCGATCTCTCGATTGAAGTGCCATTGTTGCCACCAGGCCTGCTTAGCAAAAAGCGCATTGCC
GGTGAAAACAGCGCTCAGGTACGGGAACGAGTGCTGTTGGCGCGTGAAAGGCAGCTCAGTCGAGCGGGGAAGATTAATGC
CCTGCTGAACAATCATGAGGTCGAACGGGATTGCCGACTTAACGACGCGGACGCGGATTTTCTTGAAACGACGTTAAACA
GGTTGGGATTATCGGTTCGCGCCTGGCAGCGGATCCTGAAAGTGGCTCGCACGCTGGCGGATTTGGCAGGAGATCGGGCT
ATTGATAAGCGACACTTGAGTGAAGCGCTTGGCTACCGCAGTATGGATCGCCTGCTGCTGCAGCTGCACCGCAGCCTTGA
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.601

99.803

0.665
  comM Glaesserella parasuis strain SC1401

64.497

100

0.645
  comM Vibrio cholerae strain A1552

64.343

99.014

0.637
  comM Vibrio campbellii strain DS40M4

63.745

99.014

0.631
  comM Legionella pneumophila str. Paris

50.202

97.83

0.491
  comM Legionella pneumophila strain ERS1305867

50.202

97.83

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.098

100

0.454

Multiple sequence alignment