Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D0856_RS17690 | Genome accession | NZ_CP033144 |
| Coordinates | 3649765..3650307 (+) | Length | 180 a.a. |
| NCBI ID | WP_122068765.1 | Uniprot ID | - |
| Organism | Vibrio owensii strain V180403 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3644765..3655307
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0856_RS17675 (D0856_17675) | uvrA | 3644831..3647653 (-) | 2823 | WP_122068763.1 | excinuclease ABC subunit UvrA | - |
| D0856_RS17680 (D0856_17680) | galU | 3647792..3648664 (-) | 873 | WP_038864585.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| D0856_RS17685 (D0856_17685) | qstR | 3648827..3649471 (-) | 645 | WP_039842627.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| D0856_RS17690 (D0856_17690) | ssb | 3649765..3650307 (+) | 543 | WP_122068765.1 | single-stranded DNA-binding protein | Machinery gene |
| D0856_RS17695 (D0856_17695) | csrD | 3650555..3652564 (+) | 2010 | WP_020195913.1 | RNase E specificity factor CsrD | - |
| D0856_RS17700 (D0856_17700) | - | 3652576..3654023 (+) | 1448 | Protein_3245 | MSHA biogenesis protein MshI | - |
| D0856_RS17705 (D0856_17705) | gspM | 3654020..3654670 (+) | 651 | WP_009707663.1 | type II secretion system protein GspM | - |
| D0856_RS17710 (D0856_17710) | - | 3654663..3654992 (+) | 330 | WP_122068767.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 20017.07 Da Isoelectric Point: 4.9269
>NTDB_id=321848 D0856_RS17690 WP_122068765.1 3649765..3650307(+) (ssb) [Vibrio owensii strain V180403]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKGTGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQYNAPQQQQQQQAP
QQPQQQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKGTGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQYNAPQQQQQQQAP
QQPQQQYNEPPMDFDDDIPF
Nucleotide
Download Length: 543 bp
>NTDB_id=321848 D0856_RS17690 WP_122068765.1 3649765..3650307(+) (ssb) [Vibrio owensii strain V180403]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACAATTGCAACTTCTGAGTCATGGCGTGACAAAGGGACTGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAACTTGCTGAAGTAGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGCCAGCTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGACCGTTACTCAACAGAAGTTGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGTCGTGCTCAAGGTGGCGCACCTATGGGCGGTGGTCAGCCACAACAGCAACAAC
AAGGTGGTTGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAACAACAGGCTCCG
CAGCAACCACAGCAGCAATACAACGAGCCACCAATGGACTTCGACGACGATATCCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACAATTGCAACTTCTGAGTCATGGCGTGACAAAGGGACTGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAACTTGCTGAAGTAGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGCCAGCTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGACCGTTACTCAACAGAAGTTGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGTCGTGCTCAAGGTGGCGCACCTATGGGCGGTGGTCAGCCACAACAGCAACAAC
AAGGTGGTTGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAACAACAGGCTCCG
CAGCAACCACAGCAGCAATACAACGAGCCACCAATGGACTTCGACGACGATATCCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
80.22 |
100 |
0.811 |
| ssb | Glaesserella parasuis strain SC1401 |
57.068 |
100 |
0.606 |
| ssb | Neisseria meningitidis MC58 |
47.253 |
100 |
0.478 |
| ssb | Neisseria gonorrhoeae MS11 |
47.253 |
100 |
0.478 |