Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   D0856_RS17685 Genome accession   NZ_CP033144
Coordinates   3648827..3649471 (-) Length   214 a.a.
NCBI ID   WP_039842627.1    Uniprot ID   -
Organism   Vibrio owensii strain V180403     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3643827..3654471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0856_RS17675 (D0856_17675) uvrA 3644831..3647653 (-) 2823 WP_122068763.1 excinuclease ABC subunit UvrA -
  D0856_RS17680 (D0856_17680) galU 3647792..3648664 (-) 873 WP_038864585.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  D0856_RS17685 (D0856_17685) qstR 3648827..3649471 (-) 645 WP_039842627.1 LuxR C-terminal-related transcriptional regulator Regulator
  D0856_RS17690 (D0856_17690) ssb 3649765..3650307 (+) 543 WP_122068765.1 single-stranded DNA-binding protein Machinery gene
  D0856_RS17695 (D0856_17695) csrD 3650555..3652564 (+) 2010 WP_020195913.1 RNase E specificity factor CsrD -
  D0856_RS17700 (D0856_17700) - 3652576..3654023 (+) 1448 Protein_3245 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24490.37 Da        Isoelectric Point: 9.5077

>NTDB_id=321847 D0856_RS17685 WP_039842627.1 3648827..3649471(-) (qstR) [Vibrio owensii strain V180403]
MKKSAYARKLFLISLEDGAAKKVEALEKYTDINIPVISTQALMEANPKHRNKILLIDFSEHKELVQSIKNLPLIWKNFET
VVFNVPKRLTTDELLTFGQLKGIFYQDSSLEQIGEGLKEIVNGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=321847 D0856_RS17685 WP_039842627.1 3648827..3649471(-) (qstR) [Vibrio owensii strain V180403]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTGATCAGCCTGGAAGATGGTGCAGCGAAAAAGGTCGAAGCTCTGGA
AAAATACACTGACATCAACATCCCTGTCATTTCGACTCAAGCTTTGATGGAAGCCAACCCGAAACACCGCAATAAAATCT
TGTTGATCGACTTTAGTGAACACAAAGAACTGGTTCAATCGATCAAAAATCTGCCGTTGATCTGGAAAAATTTTGAAACC
GTGGTGTTCAATGTACCTAAGCGTTTGACTACGGATGAATTACTGACATTTGGGCAATTGAAAGGCATTTTCTACCAAGA
TAGTTCTTTAGAACAAATTGGAGAGGGTTTAAAAGAGATCGTAAACGGTCAGAACTGGTTGCCTCGCAATGTGACTAGCC
AACTCCTACATTATTATCGCAATGTCATCAGTACCCACACAGCGCCAGCCACCGTCGATTTAACCATTCGTGAATTGCAA
GTCTTACGCTGCCTTCAAGCGGGTGCATCGAACAATCAAATGGCGGAAGAGTTGTTCGTTAGTGAGTTCACCATCAAGTC
ACACCTGTACCAAATTTTTAAGAAGCTCTCAGTAAAAAACCGCGTACAAGCCATTGCTTGGGCTGACCAAAATCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

95.327

100

0.953
  qstR Vibrio parahaemolyticus RIMD 2210633

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.804

100

0.528

Multiple sequence alignment