Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D0784_RS14625 Genome accession   NZ_CP033134
Coordinates   3092921..3093469 (-) Length   182 a.a.
NCBI ID   WP_122020073.1    Uniprot ID   -
Organism   Vibrio campbellii strain 170502     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3087921..3098469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0784_RS14605 (D0784_14595) - 3088235..3088564 (-) 330 WP_043883545.1 hypothetical protein -
  D0784_RS14610 (D0784_14600) gspM 3088557..3089207 (-) 651 WP_038891137.1 type II secretion system protein GspM -
  D0784_RS14615 (D0784_14605) - 3089204..3090652 (-) 1449 WP_122020071.1 MSHA biogenesis protein MshI -
  D0784_RS14620 (D0784_14610) csrD 3090664..3092673 (-) 2010 WP_122020072.1 RNase E specificity factor CsrD -
  D0784_RS14625 (D0784_14615) ssb 3092921..3093469 (-) 549 WP_122020073.1 single-stranded DNA-binding protein Machinery gene
  D0784_RS14630 (D0784_14620) qstR 3093763..3094407 (+) 645 WP_005432827.1 LuxR C-terminal-related transcriptional regulator Regulator
  D0784_RS14635 (D0784_14625) galU 3094572..3095444 (+) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  D0784_RS14640 (D0784_14630) uvrA 3095583..3098405 (+) 2823 WP_122020074.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20287.36 Da        Isoelectric Point: 4.9269

>NTDB_id=321703 D0784_RS14625 WP_122020073.1 3092921..3093469(-) (ssb) [Vibrio campbellii strain 170502]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQYNAPQQQQQQQQQ
APQQPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=321703 D0784_RS14625 WP_122020073.1 3092921..3093469(-) (ssb) [Vibrio campbellii strain 170502]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTTGCTGAAGTAGCAGGCGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCACCAATGGGCGGTGGTCAGCCTCAACAGCAGCAAC
AAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAGCAACAGCAACAG
GCTCCGCAGCAACCTCAGCAGCAATACAACGAGCCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.891

100

0.808
  ssb Glaesserella parasuis strain SC1401

57.068

100

0.599
  ssb Neisseria meningitidis MC58

46.154

100

0.462
  ssb Neisseria gonorrhoeae MS11

46.154

100

0.462

Multiple sequence alignment