Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   D0784_RS14630 Genome accession   NZ_CP033134
Coordinates   3093763..3094407 (+) Length   214 a.a.
NCBI ID   WP_005432827.1    Uniprot ID   -
Organism   Vibrio campbellii strain 170502     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3088763..3099407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0784_RS14615 (D0784_14605) - 3089204..3090652 (-) 1449 WP_122020071.1 MSHA biogenesis protein MshI -
  D0784_RS14620 (D0784_14610) csrD 3090664..3092673 (-) 2010 WP_122020072.1 RNase E specificity factor CsrD -
  D0784_RS14625 (D0784_14615) ssb 3092921..3093469 (-) 549 WP_122020073.1 single-stranded DNA-binding protein Machinery gene
  D0784_RS14630 (D0784_14620) qstR 3093763..3094407 (+) 645 WP_005432827.1 LuxR C-terminal-related transcriptional regulator Regulator
  D0784_RS14635 (D0784_14625) galU 3094572..3095444 (+) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  D0784_RS14640 (D0784_14630) uvrA 3095583..3098405 (+) 2823 WP_122020074.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24551.46 Da        Isoelectric Point: 8.0591

>NTDB_id=321704 D0784_RS14630 WP_005432827.1 3093763..3094407(+) (qstR) [Vibrio campbellii strain 170502]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=321704 D0784_RS14630 WP_005432827.1 3093763..3094407(+) (qstR) [Vibrio campbellii strain 170502]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCCGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAGCACAAAGAGTTGGTTCTATCGATAAAAAACCTTCCCCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTGTTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGCAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCGCTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAGTC
TCACTTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTAATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

100

100

1
  qstR Vibrio parahaemolyticus RIMD 2210633

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment